Honeybee lifetime tracking data 2019

<p>Data from barcode-based tracking of honeybees during summer of 2019, taken in an observation hive located at University of Konstanz, Germany.</p> <p>See <a href="https://github.com/jacobdavidson/bees_lifetimetracking_2019data">table of experiments and manipulations performed</a></p> <p>Associated GitHub repositories:<br> <a href="https://github.com/jacobdavidson/bees_lifetimetracking_2019data">https://github.com/jacobdavidson/bees_lifetimetracking_2019data</a><br> <a href="https://github.com/jacobdavidson/bees_drones_2019data">https://github.com/jacobdavidson/bees_drones_2019data</a></p> <p>Data usage example is on <a href="https://github.com/jacobdavidson/bees_lifetimetracking_2019data/blob/main/Data%20usage%20example%20-%20updated.ipynb">Github</a></p> <p><strong>File contents:&nbsp;&nbsp;</strong></p> <p><strong><a href="https://zenodo.org/record/7298798/files/2019_Quantity_Dates_Cohorts_DaysLived.xlsx?download=1">2019_Quantity_Dates_Cohorts_DaysLived.xlsx</a></strong></p> <p>List and description of quantities contained in the single-day summary metrics, and the metrics calculated at shorter intervals (hour, 5 minute, 1 minute). Also lists day number definitions, cohort birthdates, and estimated days lived per bee.</p> <p><strong><a href="https://zenodo.org/record/7298798/files/trajectories_000-019.zip?download=1">trajectories_000-019.zip</a>, <a href="https://zenodo.org/record/7298798/files/trajectories_020-039.zip?download=1">trajectories_020-039.zip</a>, <a href="https://zenodo.org/record/7298798/files/trajectories_040-059.zip?download=1">trajectories_040-059.zip</a>, <a href="https://zenodo.org/record/7298798/files/trajectories_060-079.zip?download=1">trajectories_060-079.zip</a>, <a href="https://zenodo.org/record/7298798/files/trajectories_080-099.zip?download=1">trajectories_080-099.zip</a>, <a href="https://zenodo.org/record/7298798/files/trajectories_100-114.zip?download=1">trajectories_100-114.zip</a></strong></p> <p>Single-day hdf files, each containing x-y trajectory data&nbsp;in the form:</p> <table> <thead> <tr> <th>daynum</th> <th>framenum</th> <th>uid</th> <th>x</th> <th>y</th> <th>camera</th> <th>theta</th> </tr> </thead> </table> <ul> <li>daynum: &nbsp;the day number of the observation period. See &#39;Day numbers&#39; sheet in <a href="https://zenodo.org/record/7298798/files/2019_Quantity_Dates_Cohorts_DaysLived.xlsx?download=1">2019_Quantity_Dates_Cohorts_DaysLived.xlsx</a></li> <li>framenum: using the camera frame rate of 3fps, the frame number with respect to&nbsp;that particular day</li> <li>uid: &nbsp;the Unique ID of each bee</li> <li>x,y: pixel coordinate values of each bee. Conversion is 80 pixels/cm</li> <li>camera: which camera the bee was detected on: 0=exit side (with dance floor - shown at right in comb map images), 1=back side (show at left in comb map images)</li> <li>theta: orientation of the bee in the hive&nbsp;</li> </ul> <p><strong><a href="https://zenodo.org/record/7298798/files/comb-contents-images2019.zip?download=1">comb-contents-images2019.zip</a></strong></p> <p>Comb content color-coded png image files, as well as pkl files for using the comb data type (see&nbsp;<a href="https://github.com/jacobdavidson/bees_lifetimetracking_2019data/blob/main/Data%20usage%20example%20-%20updated.ipynb">Data Usage Example</a>)</p> <p><strong><a href="https://zenodo.org/record/7298798/files/daydatamat.csv?download=1">daydatamat.csv</a></strong></p> <p>Summary behavioral metrics calculated for each tracked bee on each day of the experiment. See&nbsp;2018_Quantity_Descriptions.xlsx for full list and detail of quantities. Data is in the form:</p> <table> <thead> <tr> <th>Age</th> <th>Day number</th> <th>Bee unique ID</th> <th>Cohort ID</th> <th>&lt;metric1&gt;</th> <th>&lt;metric2&gt;</th> <th>...</th> </tr> </thead> </table> <p><strong><a href="https://zenodo.org/record/7298798/files/df_day1min.zip?download=1">df_day1min.zip</a>,&nbsp;<a href="https://zenodo.org/record/7298798/files/df_day5min.zip?download=1">df_day5min.zip</a>,&nbsp;<a href="https://zenodo.org/record/7298798/files/df_dayhour.zip?download=1">df_dayhour.zip</a></strong></p> <p>Behavioral metrics calculated over different time intervals: 1 minute, 5 minute, or 1 hour divisions.&nbsp;See&nbsp;2018_Quantity_Descriptions.xlsx for full list and detail of quantities. Files are organized as a single .hdf file for each day. Each file contains data in the form:</p> <p>Per-hour data:</p> <table> <thead> <tr> <th>Age</th> <th>Day number</th> <th>Bee unique ID</th> <th>Cohort ID</th> <th>Hour</th> <th>&lt;metric1&gt;</th> <th>&lt;metric2&gt;</th> <th>...</th> </tr> </thead> </table> <p>5-minute or 1-minute data:&nbsp;</p> <table> <thead> <tr> <th>Age</th> <th>Day number</th> <th>Bee unique ID</th> <th>Cohort ID</th> <th>timedivision</th> <th>&lt;metric1&gt;</th> <th>&lt;metric2&gt;</th> <th>...</th> </tr> </thead> </table> <p><strong><a href="https://zenodo.org/record/7298798/files/dfxy_dayhour.zip?download=1">dfxy_dayhour.zip</a></strong></p> <p>x-y histogram data, calculated by using a 2cmx2cm grid and binning for each hour of each day. One file per day, and each file contains data in the form:</p> <table> <thead> <tr> <th>Day number</th> <th>Bee unique ID</th> <th>Cohort ID</th> <th>Hour</th> <th>hist0</th> <th>hist1</th> <th>...</th> <th>hist1434</th> </tr> </thead> </table> <p>Convert the flattened histogram structure into a shape of [41,35] in order to view as shown in the paper or in the&nbsp;<a href="https://github.com/jacobdavidson/bees_lifetimetracking_2019data/blob/main/Data%20usage%20example%20-%20updated.ipynb">Data Usage Example</a></p>