Datasets and supplemental information accompanying scANANSE

<p>This repository contains supplementary files from the paper: &quot;<strong>scANANSE: gene regulatory network and motif analysis of single-cell clusters&quot;</strong>&nbsp;as well as several accompanying datasets.</p> <p>The supplementary files:&nbsp;</p> <p>-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Install_Rstudio.pdf</p> <p>-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; AnanseScanpy_equivalent.pdf</p> <p>The pre-processed Seurat&nbsp;object and the two pre-processed Scanpy objects&nbsp;can be used to run the scANANSE pipeline with:</p> <p>-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; preprocessed_PBMC.Rds</p> <p>-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; rna_PBMC.h5ad</p> <p>-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; atac_PBMC.h5ad</p> <p>Additional&nbsp;raw data, used to construct the pre-processed objects,&nbsp;supplemented&nbsp;from:&nbsp;</p> <p>https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_filtered_feature_bc_matrix.h5, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi,<br> https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seura</p>