Sequence diversity in MAX effectors and other genes in 120 isolates of the rice blast fungus Magnaporthe oryzae

<p>- list_of_accessions_and_assembly_statistics.xlsx: list of 120 isolate and genome assembly statistics</p> <p>- assemblies.zip: genome assemblies with repeats were not masked</p> <p>- orthogroups.txt: list of orthogroups in orthogroups.zip</p> <p>-orthogroups.zip: sequences of orthogroups, as identified using Orthofinder. Sequences were aligned using translatorX (https://doi.org/10.1093/nar/gkq291)</p> <p>- single_copy_orthologs.zip: folder which contains aligned sequences of single-copy orthologs (alignment with translatorX&nbsp;https://doi.org/10.1093/nar/gkq291); three types of genes were distinguished: MAX effectors, other secreted proteins, and other genes;&nbsp;note that to produce this dataset, the 11 orthogroups that included paralogous copies of MAX effectors were split into sets of orthologous sequences using genealogies inferred using RAXML v8, yielding a total of 94 single-copy MAX orthologs; for each split orthogroup, sets of orthologous sequences were assigned a number that was added to the orthogroup&rsquo;s identifier as a suffix (for instance paralogous sequences of orthogroup OG0000244 were split into orthogroups OG0000244_1 and OG0000244_2)</p>