AGC archives of human and SARS-CoV-2 genomes

<p><a href="https://github.com/refresh-bio/agc">AGC</a> is a tool to compress a collection of similar genomes. This Zenodo record provides pre-built AGC-3.0 archives of several datasets:</p> <ul> <li>File &quot;HPRC-yr1.agc&quot; contains <a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_009914755.3/">CHM13</a> and 94 haploid human assemblies <a href="https://github.com/human-pangenomics/HPP_Year1_Data_Freeze_v1.0">released by HPRC</a>&nbsp;in 2021. The telomere-to-telomere&nbsp;CHM13 v2&nbsp;plus&nbsp;chrY from GRCh38 is used as the reference genome.</li> <li>File &quot;sars-cov-2_ncbi-620k.agc&quot; contains 619,750 complete SARS-CoV-2 genomes with&nbsp;<a href="https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2">NC_045512.2</a> as the reference. It was&nbsp;created with AGC command line &quot;agc create -cb10000 -s3000&quot;.&nbsp;SARS-CoV-2 genomes were downloaded <a href="https://www.ncbi.nlm.nih.gov/datasets/coronavirus/genomes/">from NCBI</a> at the end of year 2021. The original FASTA is provided as &quot;sars-cov-2_ncbi-620k.fa.xz&quot;.</li> </ul>