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Representative sequences for colorectal cancer additive log ratios

<p>Representative&nbsp;sequences and corresponding feature rank tables calculated in Debelius et al, The local tumor microbiome is associated with survival in late-stage colorectal cancer patients&nbsp;(doi: &nbsp;https://doi.org/10.1101/2022.09.16.22279353)</p> <p>&nbsp;</p> <p>file_s1_tissue_alr_sequences.fasta goes with tissue_only_ranks.tsv and corresponds to Figure 1 in the manuscript.</p> <p>file_s2_interaction_dr_sequences.fasta corresponds to figure 2 and links to interaction_models_interaction_ranks.tsv and interaction_models_tissue_ranks.tsv</p> <p>&nbsp;</p> <p>file_s3_tumor_rPCA_alr_sequences.fasta corresponds to Figure 3 and links to tumor_survival_index_ranks_file3.tsv.</p> <p>&nbsp;</p> <p>The rank files provide the rank and rank group; the fasta files provide the reference sequences for the data.&nbsp;</p>

ShareScore

44/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
8
Access
20
Reuse readiness
8
Engagement
0

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