Multiplex imaging of breast cancer lymph node metastases identifies prognostic single-cell populations independent of clinical classifiers

<p>This repository contains the raw IMC data of ZTMA 26 as continuation of dataset&nbsp;<strong>10.5281/zenodo.7494413.</strong>&nbsp;The zip files starting with ZTMA contain the raw IMC measurements (mcd&nbsp;and txt) of those parts of the TMA. The TMA measurements are split up into parts in order to avoid huge files.</p> <p>Additionally, this repository contains the metadata of the patients analyzed in this study, the panel information and the single-cell data that was extracted from the multiplexed images together with the associated metadata in SingleCellExperiment format for analysis in R.</p> <p>The analysis.zip folder contains files that were written out during the analysis according to the scripts in&nbsp;https://github.com/BodenmillerGroup/BC_LN_metastses.</p> <p>The single-cell and other data outputs from CellProfiler can be found in the cpout.zip file.</p> <p>The IF_whole_sections.zip file contains the IF images of the primary breast cancer sections (czi files) and the extracted single-cell data.</p>