Skip to main content
zenodoopen

Test fastq files for the BSA-seq Snakemake pipeline

<p>Rice genome reference fasta and individuals with high/low phenotype fastq files to be used to test the <a href="https://github.com/SilkeAllmannLab/snakemake_bsaseq">Snakemake BSA-seq pipeline</a> built to produce output files compatible for BSA-seq analysis using QTLSeqR.</p> <p>Genome file source: <a href="https://rapdb.dna.affrc.go.jp/download/irgsp1.html">https://rapdb.dna.affrc.go.jp/download/irgsp1.html </a></p> <p>Fastq file source: <a href="https://www.ncbi.nlm.nih.gov/bioproject/687818">https://www.ncbi.nlm.nih.gov/bioproject/687818</a></p> <p>Publication:&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9123124/">https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9123124/</a></p> <p>&nbsp;</p>

ShareScore

36/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
4
Harmonization
4
Access
20
Reuse readiness
8
Engagement
0