Graph construction method impacts variation representation and analyses in a bovine super-pangenome

<p>Pangenomes for minigraph, pggb, and cactus containing assemblies from</p> <ul> <li>Hereford (cattle reference genome)</li> <li>Highland</li> <li>Brown Swiss</li> <li>Angus</li> <li>Simmental</li> <li>Original Braunvieh</li> <li>Piedmontese</li> <li>Nellore</li> <li>Brahman</li> <li>Yak</li> <li>Bison</li> <li>Gaur</li> </ul> <p>&nbsp;</p> <p>Also contains the genomic region classifications for the ARS-UCD1.2 reference genome for</p> <ul> <li>Satellites</li> <li>Tandem repeats</li> <li>Low mappability</li> <li>Repetitive regions</li> <li>Normal (everything else)</li> </ul>