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Protein Function Embeddings: First Beta Release of Datasets

<p>This release corresponds to the datasets generated from a&nbsp;thesis work that explores how information for protein functions can be exploited through embeddings so that the produced information can be used to improve protein function annotations. The underlying hypothesis here is that any pair of proteins with high sequence similarity will also share a similar biological function which would be reflected by the corresponding protein embeddings. The comparison and evaluation of this is done using two text-driven embedding approaches: Word2doc2Vec and Hybrid-Word2doc2Vec.</p>

ShareScore

40/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
16
Reuse readiness
8
Engagement
4

Topics