Newick Trees for EMERGE methanogen genome tree, and methylotrophic gene trees

<p>Newick trees provided for phylogenomic and phylogenetic analyses from Ellenbogen&nbsp;<em>et al.&nbsp;</em>(in prep). The methanogen genome tree (gtdbtk.ar53.decorated.tree) was built using a GTDB-Tk v12.1.1 r207 run with the de novo workflow. All other trees are RAxML gene trees built using ProtPipeliner (<a href="https://github.com/TheWrightonLab/Protpipeliner/blob/master/protpipeliner.py">https://github.com/TheWrightonLab/Protpipeliner/blob/master/protpipeliner.py</a>)&nbsp;to confirm the functional identity of identified methylotrophic genes from methanogens and bacteria. The names of the Newick trees correspond to relevant gene groupings as discussed in the associated manuscript.</p> <p>DRAM v1.3.2 raw annotations files for Stordalen methanogen MAGs also included.</p> <p>FUNDING:<br> This research is a contribution of the EMERGE Biology Integration Institute, funded by the National Science Foundation, Biology Integration Institutes Program, Award # 2022070.<br> We thank the Swedish Polar Research Secretariat and SITES for the support of the work done at the Abisko Scientific Research Station. SITES is supported by the Swedish Research Council&#39;s grant 4.3-2021-00164.<br> This study was also funded by the Genomic Science Program of the United States Department of Energy Office of Biological and Environmental Research, grant #s DE-SC0010580 and DE-SC0016440.</p>