bksnake_reference_genomes_2022-07-15_hg38

<p>Human hg38 reference genomes and annotations files from RefSeq/NCBI and Ensembl. Archived in a tar.gz file.</p> <p>Files are processed and formatted so that they can be used together with the bulk RNASeq pipeline &quot;bksnake&quot;.</p> <p>STAR index files for the genome file are&nbsp;also included.</p> <p>The tar.gz file contains the following data folders</p> <ul> <li>genomes_2022-07-15_hg38/fasta</li> <li>genomes_2022-07-15_hg38/star_2.7.10b</li> <li>genomes_2022-07-15_hg38/gtf/ensembl</li> <li>genomes_2022-07-15_hg38/gtf/refseq</li> </ul> <p>&quot;fasta&quot; contains fasta genomic sequences and index files, as well as ribosomal transcripts &quot;intervals&quot; and chromosome &quot;dictionary&quot; files. &quot;star_2.7.10b&quot; contains STAR aligner index files. &quot;gtf/ensembl&quot; and &quot;gtf/refseq&quot; contain Ensembl and RefSeq gtf files as well as &quot;genePred&quot; and &quot;refFlat&quot; files.</p> <p>The recipe how to generate these files is going to be published in github.</p> <p>The bulk RNASeq pipeline &quot;bksnake&quot; is going to be published in github.</p>