DIA benchmarking dataset (based on Gotti et al., 2021)

<p>Benchmarking dataset of DIA acquisition methods, based on the manuscript &quot;Extensive and Accurate Benchmarking of DIA Acquisition Methods and Software Tools Using a Complex Proteomic Standard&quot; by <a href="https://pubs.acs.org/doi/10.1021/acs.jproteome.1c00490">Gotti et al. (2021)</a>, for the purpose of R vignette describing analysis of DIA data using the <a href="https://bioconductor.org/packages/release/bioc/html/QFeatures.html">QFeatures</a> platform. The raw data are publicly available on the ProteomeXchange platform under identifier <a href="http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD026600">PXD026600</a>. Subset of files, containing &#39;overlapped&#39; in the File Name, were searched using the <a href="https://github.com/vdemichev/DiaNN">DIA-NN </a>software. Here, pipeline settings, as well as FASTA files and resulting report.tsv file (here labelled as benchmarkingDIA.tsv) are provided.</p>