Transposable element (TE) subfamily cis-regulatory activities estimated from 441 transgene overexpression experiments in human embryonic stem cells (hESCs)

<p>Additional file 1 from &quot;Statistical learning quantifies transposable element-mediated cis-regulation&quot;, Pulver et al.</p> <p>Raw expression data came from Nakatake et al., Cell Reports 2020</p> <p>Activities were estimated using craTEs, described in Pulver et al. 2023, with parameter L = 2.5e5 bp.</p> <p>Rows are transposable element (TE) subfamilies, columns are as follow:</p> <ul> <li>Estimate: estimated cis-regulatory activity, correponds to a linear regression coefficient</li> <li>Std. Error: standard error of linear regression coefficient</li> <li>t value: t value corresponding to t-test with H0: Estimate = 0 and HA: Estimate != 0</li> <li>Pr(&gt;|t|) : probability (p-value) of observing a more extreme t value</li> <li>p_adj: p-values adjusted with the Benjamini Hochberg procedure</li> <li>TE: TE subfamily</li> <li>condition: concatenation of the name of the overexpressed transgene and the timepoint</li> <li>transgene: symbol for the overexpressed transgene</li> <li>timepoint: time under transgene induction via DOX treatment</li> </ul>