Swan 3.0 sample data

<p>Data for use in running the <a href="https://freese.gitbook.io/swan/">Swan</a>&nbsp;tutorials. Included are the following tgz&#39;d files:</p> <ul> <li> <p>all_pass_list.csv: TALON pass list of transcript / gene IDs from HFFc6 / HepG2 dataset</p> </li> <li> <p>temp_anndata.h5ad: AnnData used to pass to PyDESeq2</p> </li> <li> <p>all_talon_observedOnly.gtf: Transcripts from HFFc6 / HepG2 dataset</p> </li> <li> <p>metadata.tsv: Metadata for the&nbsp;HFFc6 / HepG2 dataset</p> </li> <li> <p>swan.p: Pickled SwanGraph from the&nbsp;HFFc6 / HepG2 dataset</p> </li> <li> <p>swan_anndata.h5ad: AnnData version of the&nbsp;HFFc6 / HepG2 data</p> </li> <li> <p>swan_modelad.p: Pickled SwanGraph subset from the ENCODE4 long-read RNA-seq dataset with just the samples from MODEL-AD</p> </li> <li> <p>talon.db: TALON db from&nbsp;HFFc6 / HepG2 dataset</p> </li> <li> <p>all_talon_abundance_filtered.tsv: Counts matrix from&nbsp;HFFc6 / HepG2 dataset</p> </li> <li> <p>gencode.v29.annotation.gtf: Human reference transcriptome annotation</p> </li> </ul>