Functional matrices N, TEs vs promoters, weighted with L = 2.5e5kb, hg19

<p>Refers to the manuscript: &quot;Statistical learning quantifies transposable element-mediated cis-regulation&quot;, by Pulver et al., 2023.</p> <p>&nbsp;</p> <p>TE subfamilies are split between so-called &quot;functional&quot; and complementary &quot;non-functional&quot; fractions. Functional integrants were defined as such based on overlapping epigenomics data (e.g. transcription factor binding by ChIP-seq, open chromatin by ATAC-seq).</p> <p>&nbsp;</p> <p>The &quot;functional_weighted_mappability&quot; only contain cis-regulatory weights for selected subfamilies, split between low and high mappability (median split over averages per integrants). They should be incorporated into N_functional_weighted matrices for the appropriate experiments, and not be used on their own.</p>