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Alliance of Genome Resources Genetic Interactions

<p>These files provide a set of annotations of genetic interactions for genes for human, rat, mouse, zebrafish, fruit fly, nematode, African clawed frog,and yeast). The files are in the <a href="https://github.com/HUPO-PSI/miTab/blob/master/PSI-MITAB27Format.md">PSI-MI TAB 2.7 format</a>, a tab-delimited format established by the <a href="http://www.psidev.info/">HUPO Proteomics Standards Initiative</a> Molecular Interactions (PSI-MI) working group. The interaction data are sourced from Alliance members WormBase and FlyBase, as well as the <a href="https://thebiogrid.org/">BioGRID database</a>. Identities or types of genetic perturbations for each interactor (if available) are provided in columns 26 and 27 and relevant phenotypes or traits (if available) are provided in column 28.</p> <ul> <li>Homo sapiens (human; NCBI:txid 9606)</li> <li>Caenorhabditis elegans (nematode; NCBI:txid 6239)</li> <li>Danio rerio (zebrafish;NCBI:txid 7955)</li> <li>Drosophila melanogaster (fruit fly; NCBI:txid 7227)</li> <li>Mus musculus (mouse; NCBI:txid10090)</li> <li>Rattus norvegicus (rat; NCBI:txid 10116)</li> <li>Saccharomyces cerevisiae (yeast; NCBI:txid 559292)</li> <li>Xenopus laevis (African clawed frog; NCBI:txid 8355)</li> </ul>

ShareScore

44/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
20
Reuse readiness
8
Engagement
4

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