brca_tcga_pyg_dataset

<p>This is a dataset that was generated by integrating the breast cancer (BRCA TCGA) dataset from the cBioPortal (<a href="https://www.cbioportal.org/">cbioportal.org</a>) and a biological network for node connections from Pathway Commons (<a href="http://www.pathwaycommons.org/">www.pathwaycommons.org</a>).</p> <p>Data was preprocessed to form one dataset that could be converted to PyTorch Geometric data objects.</p> <p>This data was retrieved in the CSV format, then processed to form a graph-based dataset for use with Graph Neural Networks (GNN).</p> <p>The dataset contains the gene features of each patient and the overall survival time (in months) of each patient, which are the labels.</p>