Molecular dynamics dataset of barnase-barstar
<p>This dataset contains all-atom molecular dynamics trajectories of barnase with its inhibitor barstar. All details regarding the molecular dynamics setup are given in reference [1]. The dataset consists of three parts and comes with a time step of 1 ns.</p> <p><strong>amber-adaptive.tar: </strong>adaptive MD trajectories using Amber ff99SB. Cumulative length of about 0.3 ms.</p> <p><strong>amber-gpugrid,.tar: </strong>longer simulations computed on GPUgrid, using Amber ff99SB. Cumulative length of about 1.7 ms.</p> <p><strong>charmm-adaptive.tar: </strong>adaptive MD trajectories using CHARMM36. Cumulative length of about 0.5 ms.</p> <p>[1] Plattner, N.; Doerr, S.; Fabritiis, G. D.; Noé, F. Complete Protein–Protein Association Kinetics in Atomic Detail Revealed by Molecular Dynamics Simulations and Markov Modelling. <em>Nature Chemistry</em> <strong>2017</strong>, <em>9</em> (10), 1005. <a href="https://doi.org/10.1038/nchem.2785">https://doi.org/10.1038/nchem.2785</a>.</p>
ShareScore
32/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 0
Dataset details
- Repository
- zenodo
- Published
- August 15, 2023
- License
- cc-by-4.0
- DOI
- 10.5281/zenodo.8252422
Scored with release 0.9.0
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