Supplementary data files for Manzano-Marín et. al. 2023 "Evolution of an alternative genetic code in the Providencia symbiont of the haematophagous leech Haementeria acuecueyetzin"

<p>The data set consists of siz folders:</p> <p><strong>1)</strong> &quot;genome_data&quot;: GenBank-formatted annotation files for newly sequenced <em>Providencia siddallii</em> endosymbionts.</p> <p><strong>2)</strong> &quot;orthoMCL_data&quot;: Flat-text output files from the OrthoMCL pipeline.</p> <p><strong>3)</strong> &quot;phylongey&quot;: MrBayes run files for <em>Providencia</em> spp. Bayesian phylogenetic inference.</p> <p><strong>4)</strong> &quot;UGA_proteins_and_genes&quot;: FASTA-formatted alignments of UGA-containing protein-coding gene sequences from figure 3 and table 3.</p> <p><strong>5)</strong> &quot;RepeatModeler_Prsiddallii&quot;: Log files for RepeatModeler runs of <em>P. siddallii</em> genomes.</p> <p><strong>6)</strong> &quot;checkM2_Psiddallii&quot;: checkM2 input and output files for <em>P. siddallii</em> protein sets.</p> <p><strong>7)</strong> &quot;breseq_runs&quot;: breseq output folders for variant calling on newly assembled genomes.</p> <p><strong>8)</strong> &quot;GSAlign_Prsiddallii_GTOCOR&quot;: output files of variant calling using GSAlign between <em>P. siddallii</em> strain GTOCOR1 (sampled in 2015 and reported in Manzano-Mar&iacute;n <em>et. al.</em> 2015 <em>GBE</em>) and GTOCOR2 (sampled in 2019 and reported in the associated work).</p>