The panzootic potential of SARS-CoV-2

<p>Our dataset collection comprises files containing tree files and character matrices, serving as invaluable resources for researchers aiming to reproduce or extend the findings presented in our manuscript.</p> <ul> <li>panzootic_virus_metadata_lineage3.csv -&nbsp;metadata to make the trees&nbsp;(Figure 2)</li> <li>panzootic_virus.fa - the virus alignment file&nbsp;(Figure 2)</li> <li>panzootic_virus_rooted.treefile -&nbsp;the virus tree file (Figure 2)</li> <li>AA_gisaid_revANNA-ADR_05042022finalAL.xlsx - dataset for generation Figure 3</li> <li>COVID_ToL,csv - metadata for mammal tree and trait matrix</li> <li>COVID_ToL_Infection.csv&nbsp;- metadata for mammal tree and trait matrix</li> <li>COVID_ToL_ACE2.csv -&nbsp; metadata for mammal tree and trait matrix</li> <li>COVID_ToL_CAT.csv -&nbsp; metadata for cat tree and trait matrix</li> <li>TopoFree_ND_MCC_SpeciesTree.rdata - Species tree file</li> <li>TopoFree_ND_MCC_SpeciesTree_ace_ACE2_ARD.rdata&nbsp;-&nbsp;Figure S3</li> <li>TopoFree_ND_MCC_SpeciesTree_simmap_ACE2_ARD.rdata -&nbsp;Figure S2</li> <li>TopoFree_ND_MCC_Famtree_V2.rdata -&nbsp;Family tree file</li> <li>TopoFree_ND_MCC_FamTree_V2_ace_ACE2.rdata&nbsp;-&nbsp;Figure S4</li> <li>TopoFree_ND_MCC_Famtree_V2_simmap_ACE2.rdata - Figure 4</li> <li>TopoFree_ND_CatTree.rdata - Cat tree file</li> <li>TopoFree_ND_MCC_CatTree_ace_Infection_ARD.rdata&nbsp;-&nbsp;Figure S6</li> <li>TopoFree_ND_MCC_CatTree_simmap_Infection_ARD.rdata -&nbsp;Figure S5</li> </ul>