Cell Health Data Supplementary Files

<p>This dataset contains&nbsp;supplementary files related to the <em><a href="https://github.com/WayScience/cell-health-data">cell-health-data</a></em> repository that were too large to upload on GitHub. Each of these files were saved to and loaded from an external hard drive during Cell Health Data Processing.&nbsp;These files include:</p> <ul> <li>single_cell_classification_probabilities/ : Single cell classification probabilities derived with each model trained in&nbsp;<a href="https://github.com/WayScience/phenotypic_profiling_model">phenotypic_profiling_model</a>. Each compressed csv file in&nbsp;single_cell_classification_probabilities/&nbsp;corresponds to single-cell classifications from a particular&nbsp;plate as derived with&nbsp;a particular model.&nbsp;The model used to derive the probabilities is indicated by the file&#39;s parent folders. Each compressed csv file includes the metadata (location and perturbation) and phenotypic class probabilities&nbsp;for each cell in the plate.</li> <li>classification_profiles/ : This folder contains aggregated data known as &quot;classification profiles&quot;. These profiles are generated from the single-cell classification probabilities found in the &#39;single_cell_classification_probabilities/&#39; folder. Specifically, for each model, we find the mean of the single-cell classification probabilities across each&nbsp;perturbation&nbsp;and cell line&nbsp;to create a composite profile. This aggregated data provides a summarized view of cell behavior for each perturbation/cell line combination, as predicted by each model.</li> </ul> <p>For more information regarding the generation of this data, please see&nbsp;<a href="https://github.com/WayScience/cell-health-data/tree/master/4.classify-single-cell-phenotypes">cell-health-data/4.classify-single-cell-phenotypes</a>.</p>