Skip to main content
zenodoopen

16S V4-V4 taxonomy classifier

<p>16S metabarcoding databases and naive-bayes classifier&nbsp;specific to the V4-V5 region. Built&nbsp;from&nbsp;the <a href="https://www.arb-silva.de/documentation/release-138/">Silva 138.1 SSU Ref NR 99</a> database using Qiime2 (version 2021.2).</p> <p>Primers used:</p> <p>EMP 16S 515f:&nbsp;GTGYCAGCMGCCGCGGTAA</p> <p>EMP 16S 926r:&nbsp;CCGYCAATTYMTTTRAGTTT</p> <table> <caption>File description</caption> <thead> <tr> <th scope="col"> <table> <thead> <tr> <th>File</th> <th>Description</th> </tr> </thead> <tbody> <tr> <td>silva-138-99-seqs.qza</td> <td>Full length Silva 138.1 SSU 99 sequences</td> </tr> <tr> <td>silva-138-99-tax.qza</td> <td>Taxa for full length Silva 138.1 SSU 99 database</td> </tr> <tr> <td>refseqs_V4-V5.qza</td> <td>Sequences for 16S V4-V5 (primers 515f, 926r), extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 (forward compatible)</td> </tr> <tr> <td>classifier_V4-V5.qza</td> <td>Unweighted (uniform) naive-bayes classifier for 16S V4-V5 (primers 515f, 926r) extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2&nbsp;</td> </tr> </tbody> </table> </th> <th scope="col">&nbsp;</th> </tr> </thead> </table>

ShareScore

36/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
8
Access
16
Reuse readiness
0
Engagement
4

Topics