Skip to main content
zenodoopen

Motif HOCOMOCO files preprocessed for DAStk

<p>Pre-scanned motif files HOCOMOCO_v11_p1e-6_grch38.tar.gz, HOCOMOCO_v11_p1e-6_hg19.tar.gz and HOCOMOCO_v11_p1e-6_mm10.tar.gz for the <code>GRCh38/hg38</code>, <code>hg19</code> and <code>mm10</code> reference genomes, respectively. These files are input files for DAStk (https://github.com/Dowell-Lab/DAStk) and have been generated from HOCOMOCO&#39;s v11 mononucleotide model, background-corrected for each reference genome, as described in the following paper:</p> <p><em>Kulakovskiy, I.V., Vorontsov, I.E., Yevshin, I.S., Sharipov, R.N., Fedorova, A.D., Rumynskiy, E.I., Medvedeva, Y.A., Magana-Mora, A., Bajic, V.B., Papatsenko, D.A., et al. (2018). <a href="https://academic.oup.com/nar/article/46/D1/D252/4616875">HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis</a>. Nucleic Acids Res 46, D252&ndash;D259.</em></p>

ShareScore

36/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
4
Harmonization
8
Access
16
Reuse readiness
8
Engagement
0

Dataset details

Repository
zenodo
Published
October 10, 2023
License
cc-by-4.0
DOI
10.5281/zenodo.8432114

Scored with release 0.9.0

ScienceDex for faculty

Your academic CV and NIH biosketch

Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.