Immcantation 10x Tutorial Data
<p>Necessary datasets to run the Immcantation 10x Tutorial. Below is the description of the files in the data set. </p> <ul> <li>BCR_data_sample1.tsv: data corresponding to the first sample (sample 1) of the two samples analyzed in the 10x tutorial. This is the sample used to show the Change-O steps.</li> <li>filtered_contig_annotations.csv: filtered contig annotations file for sample 1, output of cellranger vdj.</li> <li>filtered_contig.fasta: sequence fasta file for sample 1, output of cellranger vdj.</li> <li>BCR_data.tsv: AIRR rearrangement file containing the data for both samples 1 and 2 used in the 10x tutorial.</li> <li>BCR.data_08112023.rds: R dataframe object containing the single-cell BCR sequencing data for both samples 1 and 2 used in the 10x tutorial.</li> <li>GEX.data_08112023.rds: Seurat object containing the single-cell gene expression data used in the 10x tutorial.</li> </ul>
ShareScore
40/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 8
- Harmonization
- 4
- Access
- 20
- Reuse readiness
- 8
- Engagement
- 0