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Immcantation 10x Tutorial Data

<p>Necessary datasets to run the Immcantation 10x Tutorial. Below is the description of the files in the data set.&nbsp;</p> <ul> <li>BCR_data_sample1.tsv: data corresponding to the first sample (sample 1) of the two samples analyzed in the 10x tutorial. This is the sample used to show the Change-O steps.</li> <li>filtered_contig_annotations.csv: filtered contig annotations file for sample 1, output of cellranger vdj.</li> <li>filtered_contig.fasta: sequence fasta file for sample 1, output of cellranger vdj.</li> <li>BCR_data.tsv: AIRR rearrangement file containing the data for both samples 1 and 2 used in the 10x tutorial.</li> <li>BCR.data_08112023.rds: R dataframe object containing the single-cell BCR sequencing data for both samples 1 and 2 used in the 10x tutorial.</li> <li>GEX.data_08112023.rds: Seurat object containing the single-cell gene expression data used in the 10x tutorial.</li> </ul>

ShareScore

40/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
20
Reuse readiness
8
Engagement
0

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