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249
datasets available to search
ShareScore release 0.9.0
Dataset results
249 results for “3D Structure”
Reprogramming of 3D genome structure underlying HSPC development in zebrafish [ChIP-seq]
GEO Series GSE262185. Danio rerio. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
3D Chromosome Structure Can Reveal Stem Cell Signatures (ChIP-Seq)
GEO Series GSE126010. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Establishment of 3D chromatin structure after fertilization and the metabolic switch at the morula-to-blastocyst transition require CTCF.
GEO Series GSE180307. Mus musculus. 68 samples. Type: Other; Expression profiling by high throughput sequencing.
3D Chromatin Structures Foreshadow the Drosophila Fate Map
GEO Series GSE265818. Drosophila melanogaster; Drosophila virilis. 21 samples. Type: Other.
Cell-of-origin specific 3D genome structure acquired during somatic cell reprogramming [ChIP-Seq]
GEO Series GSE76478. Mus musculus. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Reorganized 3D genome structures support transcriptional regulation in mouse spermatogenesis
GEO Series GSE147536. Mus musculus. 30 samples. Type: Other; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell 3D genome structure reveals distinct human pluripotent states
GEO Series GSE260995. Homo sapiens. 29 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [800U]
GEO Series GSE279583. Homo sapiens. 96 samples. Type: Other.
Hmga2 protein loss alters nuclear envelope and affects 3D chromatin structure upon the induction of pluripotent stem cell commitment [HiC]
GEO Series GSE200672. Mus musculus. 4 samples. Type: Other.
Establishment of 3D chromatin structure after fertilization and the metabolic switch at the morula-to-blastocyst transition require CTCF [Hi-C]
GEO Series GSE180305. Mus musculus. 40 samples. Type: Other.
O-GlcNAcylation of CTCF regulates 3D chromatin structure [ATAC-seq]
GEO Series GSE255855. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Reprogramming of 3D genome structure underlying HSPC development in zebrafish
GEO Series GSE262738. Danio rerio. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The variation of bivalent histone modifications and 3D chromosome structure during germline stem cell differentiation
GEO Series GSE163931. Mus musculus. 31 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
TADs are 3D structural units of higher-order chromosome organization in Drosophila
GEO Series GSE99107. Drosophila melanogaster. 6 samples. Type: Other.
Single-cell 3D genome structure reveals distinct human pluripotent states (CUT&Tag-seq)
GEO Series GSE260993. Homo sapiens. 19 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
rRNA Biogenesis Regulates Mouse 2C-like State by 3D Structure Reorganization of Peri-Nucleolar Heterochromatin [RNA-seq]
GEO Series GSE166025. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Predicting modulaters of TE-driven chromatin 3D structure
GEO Series GSE248863. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing; Other.
Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration [Hi-C]
GEO Series GSE227443. Mus musculus. 18 samples. Type: Other.
Altered 3D chromatin structure permits inversional recombination at the IgH locus
GEO Series GSE133185. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [600U]
GEO Series GSE279479. Homo sapiens. 96 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.