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779
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ShareScore release 0.9.0
Dataset results
779 results for “CTCF”
CTCF is required to form regulatory and physical boundaries at limited sites in the Drosophila nervous system
GEO Series GSE146752. Drosophila melanogaster. 33 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
CTCF chromatin residence time controls 3D genome organization, gene expression and DNA methylation in pluripotent cells [ChIP-Seq, RNA-seq, Med-Seq]
GEO Series GSE154008. Mus musculus. 32 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
H3K9 trimethylation in active compartments optimizes stimulus-regulated transcription by restricting usage of CTCF sites in SINE-B2 repeats [HiC]
GEO Series GSE189973. Mus musculus. 4 samples. Type: Other.
Deciphering the role of RNA in regulating CTCF’s DNA binding affinity in leukemia cells [RNA-Seq.New]
GEO Series GSE288854. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions
GEO Series GSE70764. Mus musculus; Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
R-loop associated G-quadruplexes reinforce CTCF interactions
GEO Series GSE208145. Mus musculus. 66 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing.
Development of gene expression signatures of CTCF-expressing vs CTCF-depleted hepatocellular carcinoma cells
GEO Series GSE100533. Homo sapiens. 2 samples. Type: Expression profiling by array.
The genome wide mapping of H3K4kme3, H3K27ac and H3K27me3 in Ctcf f/f and Ctcf Δ/Δ CALM-AF10 AML cells [CTCF RNA-seq]
GEO Series GSE281044. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation [RNA-Seq]
GEO Series GSE205311. Homo sapiens. 28 samples. Type: Expression profiling by high throughput sequencing.
Combined CRISPR and proteomics screening reveal a cohesin-CTCF-bound allele contributing to increased expression of RUVBL1 and prostate cancer progression [gRNA]
GEO Series GSE224653. Homo sapiens; Expression vector lentiGuide-Puro. 10 samples. Type: Other.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [ChIP-Seq]
GEO Series GSE98245. Homo sapiens. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide CTCF binding maps in mouse ES and fibroblast cells
GEO Series GSE27944. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mapping catalytically engaged TOP2B in neurons reveals the principles of topoisomerase action within the genome [CTCF ChIP-Seq]
GEO Series GSE227457. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The genome wide mapping of H3K4kme3, H3K27ac and H3K27me3 in Ctcf f/f and Ctcf Δ/Δ CALM-AF10 AML cells [Tgm2 RNA-seq]
GEO Series GSE281045. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
CTCF binding profiles in Drosophila melanogaster 3rd instar larva T1 and T3 leg discs
GEO Series GSE62234. Drosophila melanogaster. 4 samples. Type: Genome binding/occupancy profiling by genome tiling array.
CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8+ T cells [RNA-Seq]
GEO Series GSE205079. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [RNA-seq]
GEO Series GSE98440. Homo sapiens. 26 samples. Type: Expression profiling by high throughput sequencing.
Molecular basis of CTCF binding polarity in genome folding
GEO Series GSE156868. Mus musculus. 161 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and CTCF cKO Transcriptomes
GEO Series GSE151501. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Systematic assessment of ISWI subunits reveals that NURF creates local accessibility for CTCF (RNA-Seq)
GEO Series GSE250227. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.