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Dataset results
200 results for “Genomic Resources”
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics [ChIP-Seq]
GEO Series GSE69919. Pan troglodytes; Homo sapiens. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis.
Generation of a Panel of Induced Pluripotent Stem Cells From Chimpanzees: a Resource for Comparative Functional Genomics
GEO Series GSE61343. Pan troglodytes; Homo sapiens. 65 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by array; Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis.
A GENETIC, GENOMIC, AND COMPUTATIONAL RESOURCE FOR EXPLORING NEURAL CIRCUIT FUNCTION
GEO Series GSE116969. Drosophila melanogaster. 266 samples. Type: Expression profiling by high throughput sequencing.
Resources for gasAcu1-4, a new stickleback reference genome
<p><em>gasAcu1-4</em> is a new version of the stickleback reference genome. It only minorly differs from the 2017 Hi-C guided assembly by Peichel, Sullivan, Liachko, and White (https://doi.org/10.1093/jhered/esx058) to improve the subtelomeric <em>Pitx1</em> locus and the mitochondrial genome. We here present basic resources for utilizing this version of the reference genome: the fasta sequence of the assembly and liftOver chains for converting coordinates between this reference version and the original (Broad S1) <em>gasAcu1 </em>assembly (https://www.nature.com/articles/nature10944).</p> <p>This assembly can be visualized and other data downloaded via the Table Browser of the UCSC Genome Browser by copying the following track hub URL into the "My Hubs" tab at https://genome.ucsc.edu/cgi-bin/hgHubConnect: https://sbwdev.stanford.edu/kingsleyAssemblyHub/hub.txt.</p>
Data from: Development and preliminary evaluation of a genome-wide single-nucleotide polymorphisms resource generated by RAD-seq for the small yellow croaker (Larimichthys polyactis)
Recent advances in high-throughput sequencing technologies have offered the possibility to generate genome-wide sequence data to delineate previously unidentified genetic structure, obtain more accurate estimates of demographic parameters, and to evaluate potential adaptive divergence. Here, we identified 27 556 single-nucleotide polymorphisms for the small yellow croaker (Larimichthys polyactis) using restriction-site-associated DNA (RAD) sequencing of 24 individuals from two populations. Significant sources of genetic variation was identified, with an average nucleotide diversity (π) of 0.00105 ± 0.000425 across individuals and long-term effective population size was thus estimated to range between 26 172 and 261 716. According to the results, no differentiation between the two populations was detected based on the SNP dataset of top quality score per contig or neutral loci. However, the two analyzed populations were highly differentiated based on SNP dataset of both top FST value per contig and the outlier SNPs. Moreover, local adaptation was highlighted by an FST-based outlier tests implemented in LOSITAN and a total of 538 potentially locally selected SNPs were identified. BLAST2GO annotation of contigs containing the outlier SNPs yielded hits for 37 (66%) of 56 significant BLASTX matches. Candidate genes for local adaptation constituted a wide array of biological functions, including cellular response to oxidative stress, actin filament binding, ion transmembrane transport and synapse assembly. The generated SNP resources in the present study provided a valuable tool for future population genetics and genomics studies of L. polyactis.
The Belgian Genome Resource to Resolve Rare Diseases
ClinicalTrials.gov study NCT07051213. IPD Sharing: YES. Countries: 1. Publications: 0.
Landscape genomics analysis: A comprehensive guide to enhance the conservation and use of plant genetic resources
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Resources for gasAcu1-4, a new stickleback reference genome
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Data on mitochondrial genome rearrangement patterns, annotation resources, and phylogenetic visualization in Actinopteri (ray-finned fishes)
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Data from: Development and preliminary evaluation of a genome-wide single-nucleotide polymorphisms resource generated by RAD-seq for the small yellow croaker (Larimichthys polyactis)
Open the record for dataset details and reuse information.
Analysis of Genome-wide 5-Hydroxymethylation of Blood Samples Stored in Differing Anticoagulants: Opportunities for the Expansion of Clinical Resources for Epigenetic Research
GEO Series GSE230027. Homo sapiens. 120 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide transcription start site mapping of Bradyrhizobium japonicum free-living cells and bacteroids - a rich resource to identify new transcripts, proteins and to study gene regulation
GEO Series GSE69059. Bradyrhizobium diazoefficiens USDA 110. 4 samples. Type: Expression profiling by high throughput sequencing.
Genomic Resources for Birdsong Research
GEO Series GSE6412. Taeniopygia guttata; Serinus canaria. 24 samples. Type: Expression profiling by array.
Functional genomics resources for the North Atlantic copepod, Calanus finmarchicus: EST database and physiological microarray.
GEO Series GSE34322. Calanus finmarchicus. 11 samples. Type: Expression profiling by array.
Transcriptome mapping of unfertilized flowers under high temperature unveils the regulatory network of genes during pollen/flower development and provides genomics resource in pea
GEO Series GSE286400. Lathyrus oleraceus. 4 samples. Type: Expression profiling by high throughput sequencing.
The Drosophila OSC Genome: A Resource for Studies of Transposon and piRNA Biology [smallRNA-Seq]
GEO Series GSE310178. Drosophila melanogaster. 10 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Genomic resources enable study of the blastoclad fungus, Coelomomyces lativittatus, an obligate parasite of mosquitoes and microcrustaceans, during infection and sporulation
GEO Series GSE222209. Coelomomyces lativittatus. 14 samples. Type: Expression profiling by high throughput sequencing.
The Drosophila OSC Genome: A Resource for Studies of Transposon and piRNA Biology [RNA-Seq]
GEO Series GSE310176. Drosophila melanogaster. 2 samples. Type: Expression profiling by high throughput sequencing.
The Drosophila OSC Genome: A Resource for Studies of Transposon and piRNA Biology [HiC]
GEO Series GSE310174. Drosophila melanogaster. 1 samples. Type: Other.
The Drosophila OSC Genome: A Resource for Studies of Transposon and piRNA Biology [PRO-Seq]
GEO Series GSE310177. Drosophila melanogaster. 6 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.