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ShareScore release 0.9.0
Dataset results
188 results for “Microbial diversity”
The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue
GEO Series GSE18420. human gut metagenome; Archaea; Bacteria. 12 samples. Type: Expression profiling by array.
Intestinal epithelial cell diversity and function in respect to age, anatomical localization, and microbial exposure - the crypt/villus transcriptome
GEO Series GSE283142. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
The microbial functional diversity in response to altered precipitation on Tibet Plateau as characterized by GeoChip
GEO Series GSE82006. uncultured soil microorganism. 18 samples. Type: Other.
The microbial functional gene diversity in anaerobic digesters under different organic loadings
GEO Series GSE93419. uncultured soil microorganism; sludge metagenome. 42 samples. Type: Other.
Functional gene diversity of microbial communities sampled in 2010 in CiPHER site, Aklaska
GEO Series GSE77866. Archaea; synthetic construct; Bacteria; Eukaryota; Viruses. 12 samples. Type: Genome variation profiling by array.
Metataxonomics 16S rDNA of maize bulk and rhizospheric soil samples with seed bacterization with Azospirillum brasilense Ab-V5 in a dilution-to-extinction of native microbial diversity
<p><strong>The beneficial plant-microbes association has been widely explored with the purpose of understanding the mechanisms involved in this interaction, in order to develop bioinoculants for agriculture aiming at sustainability and reduction of chemical inputs use. Plant growth promoting bacteria (PGPBs) have been reported as an interesting alternative to mineral fertilizers for a range of crops. The genus Azospirillum has shown potential in plant growth promotion for maize. However, the lack of holistic comprehension about PGPBs-plant-native soil microbiota can lead to inconsistency of results in field conditions. Recent ecological theories revealed that plant microbiomes are organized as microbial hubs with keystone species and helpers. The objective of this work is to characterize the microbial community associated with a commercial maize genotype (30A37PW) under influence of the potential keystone PGPB A. brasilense Ab-v5 to support the original development of a synthetic minimum microbiome including this strain as keystone for plant growth promotion. Aiming to understand the PGPB-plant-microbiome system, we conducted a greenhouse experiment in which the synergistic effect of Ab-V5 and soil native microbial community were evaluated through soil and rhizosphere metataxonomics, metagenomics and plant phenomics. Our results revealed that maize seed bacterization with the PGPB Ab-V5 promotes plant growth. This effect is boosted by the interaction with specific microbial groups present in the soil native community. The strain Ab-V5 persists in the maize rhizosphere until 25 days after sowing. In order to understand which microbial groups are important during the interaction Ab-V5-plant-native soil microbial community, 16S rDNA metataxonomics and metagenomics analysis will be conducted in maize soil and rhizosphere samples. This unprecedented omics approach for the holistic view of the complex system composed by inoculant-plant-microbiota and data integration will allow the development of new strategies for optimization of plant biostimulants recommendation with enhanced efficiency for establishment in the field. </strong></p>
Microbial diversity of an uncontaminated and a 2,4,6-TNT contaminated soil sample with CodeLink microarrays
GEO Series GSE3525. Pseudomonas putida; unidentified. 12 samples. Type: Other.
Microbial diversity and niche
<p> The diversity index and niche width of microbial communities were obtained by high-throughput sequencing analysis.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.