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231
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ShareScore release 0.9.0
Dataset results
231 results for “Natural Products”
Microparticles enhance the formation of seven major classes of natural products in native and metabolically engineered actinobacteria through accelerated morphological development.
GEO Series GSE168044. Streptomyces lividans. 18 samples. Type: Expression profiling by high throughput sequencing.
ClpC1-targeting peptide natural products differentially dysregulate the proteome of Mycobacterium tuberculosis.
GEO Series GSE310713. Mycobacterium tuberculosis H37Rv. 8 samples. Type: Expression profiling by high throughput sequencing.
Elucidation of genes enhancing natural product biosynthesis through co-evolution analysis
GEO Series GSE256209. Streptomyces griseus; Streptomyces rapamycinicus. 12 samples. Type: Expression profiling by high throughput sequencing.
Co-cultivation induces elicitation of unique Fungus-derived Natural products that leads to thiol stress mediated killing of Mycobacterium tuberculosis
GEO Series GSE255435. Mycobacterium tuberculosis. 30 samples. Type: Expression profiling by high throughput sequencing.
Single-cell transcriptomics reveals natural product Shi-Bi-Man promotes hair regeneration
GEO Series GSE196677. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome Profile of Natural Product Deoxyshikonin Induced Gene Expression in IPEC-J2
GEO Series GSE174377. Sus scrofa. 12 samples. Type: Expression profiling by high throughput sequencing.
Replacement of nitrite in meat products by natural bioactive compounds results in reduced exposure to N-nitroso compounds: the PHYTOME project
GEO Series GSE147996. Homo sapiens. 216 samples. Type: Expression profiling by array.
Pathway-based network medicine identifies novel natural products for Alzheimer's disease
GEO Series GSE270100. Mus musculus. 25 samples. Type: Expression profiling by high throughput sequencing.
A non-canonical transcriptional regulation in natural product biosynthesis
GEO Series GSE309193. Streptomyces auratus. 4 samples. Type: Expression profiling by high throughput sequencing.
The marine natural product honaucin A attenuates inflammation by activating the Nrf2-ARE pathway
GEO Series GSE93558. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Surges in biosynthetic gene cluster transcription are accompanied by bursts in natural compound production in the myxobacterium Sorangium sp. So ce836
GEO Series GSE217497. Sorangium sp.. 19 samples. Type: Expression profiling by high throughput sequencing.
The ascidian natural product eusynstyelamide B is a novel topoisomerase II poison that induces DNA damage and growth arrest in prostate and breast cancer cells
GEO Series GSE74212. Homo sapiens. 9 samples. Type: Expression profiling by array.
Unusual enzymology and peptide natural products from novel Acidobacteriota spp. associated with reef-building corals
<h1>Unusual enzymology and peptide natural products from novel Acidobacteriota spp. associated with reef-building corals</h1> <p>Raw Data for characterisation of RiPP BGCs from Acidobacteriota:</p> <h2>Plasmids</h2> <p>Plasmid maps of constructs used for heterologous production of precursors and maturases in<em> E. coli</em> in .gb format.</p> <h2>Aci</h2> <p>.raw LC-MS files of proteolytic digests (GluC) of AciA1 and AciA2 produced with or without AciKC.</p> <h2>Tha</h2> <p>.raw LC-MS files of proteolytic digests (Try or AspN) of ThaA produced with or without ThaM and/or ThaO.<br>Subfolders include LC-MS files of 13C and 15N labelling data, derivatisation with IAA, RaneyNi, and Marfey's reagent, and point mutants.</p> <h2>The</h2> <p>.raw LC-MS files of proteolytic digests (AspN) of native TheA produced with or without TheO/ TheB/ TheM/ TheN, as well as LC-MS files of proteolytic digests (AspN or Try) of point mutants, truncations and cargo-fusions produced in the presence of TheO or without.<br>Additional subfolders include MS/MS data and plasmids as .gb files.</p> <h2>NMR</h2> <p>Raw data files for 1H (1), 1H-1H COSY (2), NOESY (3), HSQC (4), and HMBC (5) spectra of purified and modified tryptic fragment of ThaA.</p> <h2>MolecularNetworking</h2> <p>Output files generated from GNPS (one folder for the pellet network and one for the supernatant network).</p> <h2>CrudeExtracts</h2> <p>.raw LC-MS files of crude extracts from <em>S. corallicola</em> supernatant (SN) or pellet (P) cultured with and without coral-derived dissolved organic matter. Extracts from medium with or without DOM (but no <em>S. corallicola</em>) are labelled with "_neg".</p> <h2>RNAseq</h2> <p>R script and input files--including raw feature counts, plasmidsaurus feature annotations, antiSMASH feature annotations and DESeq2 results--used to analyse BGC transciption data from cultivating <em>S. corallicola</em> with and without coral-dervied dissolved organic matter.</p> <h2>CellCounts</h2> <p>Raw data files, metadata, and modified cell count data from cultivating <em>S. corallicola</em> with and without coral-dervied dissolved organic matter.</p>
Large-scale comparison of machine learning algorithms for target prediction of natural products
<p>Supplement Materials of the article named "Large-scale comparison of machine learning algorithms for target prediction of natural products".</p>
Pickaxe-generated SMILES extending the reference Natural Product classifier SMILES
<p>Pickaxe augmented SMILES dataset plus first and second keras model trained with it, plus the class, pathway and superclass names to ensure the correct interpretation of the model predictions.</p>
Animal-associated marine acidobacteria with a rich natural product repertoire
<p>This dataset contains the data associated with the manuscript: "Animal-associated marine acidobacteria with a rich natural product repertoire". This includes:</p> <p>- the list of accessions used for the antiSMASH analyses (Accessions for antiSMASH analysis.txt).</p> <p>- the scripts and data use for the transPACT analysis (.rar files).</p> <p>- the metagenome-assembled genome (MAG) recovered from a coral (Millepora sp.) metagenome belonging to the Acanthopleuribacteraceae bacterial family (TARA_CO-0003230_METAG-metabat2_a200_c2k_e500.23.fa).</p> <p>- the NMR data for the products characterised in this work (phorbactazoles, acidobactamides and calyculinamide)</p>
Beneficial Effects of Natural Products on Management of Xerostomia
ClinicalTrials.gov study NCT06217614. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Natural Product System and Lifestyle Modification
ClinicalTrials.gov study NCT06931977. IPD Sharing: NO. Countries: 1. Publications: 0.
The Influence Of a Natural Anti-Inflammatory Product On Levels Of Inflammatory Markers In Cases With Osteoarthritis Of Knee
ClinicalTrials.gov study NCT02333084. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Cardioprotective Properties of Natural Anti-Platelet Activating Factor Extract From Winery By-products in Healthy Women
ClinicalTrials.gov study NCT04436263. IPD Sharing: NO. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.