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Fig. 3 in The completeness of the fossil record of plesiosaurs, marine reptiles from the Mesozoic

Fig. 3. Scatterplots comparing generalised differenced (GD) plesiosaur CCM2 and SCM2 to GD data for other time series. A. Plesiosaur CCM2 versus species richness. A weak but significant correlation between the two is driven largely by an influential data point, the Aalenian. B. Plesiosaur SCM2 versus fossiliferous marine formations (FMFs). A weak but significant correlation between the two is driven largely by an influential data point, the Aalenian. The scatterplot for CCM2 versus FMFs (not shown) shows a largely identical pattern. C. Plesiosaur SCM2 versus ichthyosaur SCM2. Silhouettes are from phylopic.org, and are credited to Adam Stuart Smith (Plesiosaurus) and Gareth Monger (Ichthyosaurus). Abbreviations: CCM, character completeness metric; FMF, fossiliferous marine formations; GD, generalised differenced; SCM, skeletal completeness metric (for detailed explanation of terms see Completeness metrics in Methods section).

Fig. 3 in A nearly complete ornithocheirid pterosaur from the Aptian (Early Cretaceous) Crato Formation of NE Brazil

Fig. 3. New ornithocheirid pterosaur specimen (SMNK PAL 3854) from the Nova Olinda Formation, Crato Basin, Brazil. A. 5th cervical vertebrae. B. 6th and 7th cervical vertebrae. C. 8th and 9th cervical ribs. Photographs (A, B, C) and explanatory drawings (A, B, C). Black shading highlights gaps/foram1 1 1 2 2 2 ina with the bone and the collapsed neurocentral canal.

Fig. 2 in A nearly complete ornithocheirid pterosaur from the Aptian (Early Cretaceous) Crato Formation of NE Brazil

Fig. 2. New ornithocheirid pterosaur specimen (SMNK PAL 3854) from the Nova Olinda Formation, Crato Basin, Brazil. Photograph detailing the cervical, notarial thoracic and terminal caudal vertebrae.

Fig. 1 in A nearly complete ornithocheirid pterosaur from the Aptian (Early Cretaceous) Crato Formation of NE Brazil

Fig. 1. New ornithocheirid pterosaur specimen (SMNK PAL 3854) from the Nova Olinda Formation, Crato Basin, Brazil. Photograph (A) and corresponding line tracing (B).

Fig. 4 in A nearly complete ornithocheirid pterosaur from the Aptian (Early Cretaceous) Crato Formation of NE Brazil

Fig. 4. The foot and pedal function of the new ornithocheirid pterosaur from the Nova Olinda Formation, Crato Basin, Brazil. A. SMNK PAL 3854. Line tracing of the ankle region (A1) and reconstructions of the ornithocheiroid pes, based on the described specimen (A2). B. The azhdarchoid pes, based on SMNK PAL 3900. Both reconstructions are scaled to a common humeral length.

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Fig. 2 in The first complete leg of a passerine bird from the early Oligocene of Poland

Fig. 2. An unidentified passerine bird leg from SE Poland, Przysietnica, early Oligocene, circa 29 Mya (ZPALWr. A/4004). A. Main slab. B. Counter slab. C. Interpretative drawing of slab and counter slab (enlarged fragments are indicated by arrows). D. Enlarged proximal tarsometatarsus from main slab. E. Enlarged distal tarsometatarsus from main slab. F. Enlarged proximal tibiotarsus from counter slab.

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Fig. 1 in The first complete leg of a passerine bird from the early Oligocene of Poland

Fig. 1. Location of the village of Przysietnica in southeastern Poland, where the specimen ZPALWr. A/4004 was found.

Fig. 1. Diplodiscus japonicus and Diplodiscus mehari mitochondrial genomes arrangement. All 22 in Characterization of the complete mitochondrial genomes of Diplodiscus japonicus and Diplodiscus mehari (Trematoda: Diplodiscidae): Comparison with the members of the superfamily Paramphistomoidea and phylogenetic implication

Fig. 1. Diplodiscus japonicus and Diplodiscus mehari mitochondrial genomes arrangement. All 22 tRNA genes are designated by the one-letter code with numbers differentiating each of the two tRNAs leucine and serine. All genes are coded by the same DNA strand and are transcribed clockwise. NCR refers to the non-coding region.

Fig. 5 in Characterization of the complete mitochondrial genomes of Diplodiscus japonicus and Diplodiscus mehari (Trematoda: Diplodiscidae): Comparison with the members of the superfamily Paramphistomoidea and phylogenetic implication

Fig. 5. Proportions between rates of non-synonymous (dN) and synonymous (dS) nucleotide substitutions (dN/dS). Bar chart for pairwise proportions of dN/dS for each of the mitochondrial subunits of the Diplodiscus spp.

Fig. 4 in Characterization of the complete mitochondrial genomes of Diplodiscus japonicus and Diplodiscus mehari (Trematoda: Diplodiscidae): Comparison with the members of the superfamily Paramphistomoidea and phylogenetic implication

Fig. 4. Sliding window analysis of the complete mt genome sequences of 11 Paramphistomoidea trematodes. A sliding window of 300 bp (in 10 bp overlapping steps) was used to estimate nucleotide diversity Pi (π) across the alignments. Nucleotide diversity was plotted against the mid-point positions of each window. Each gene boundary is identified.

Fig. 5 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 5. Phylogenetic tree Note: (A): Maximum likelihood (ML) phylogenetic tree inferred from the mitochondrial genome based on the 13 PCGs dataset; (B): Bayesian inference (BI) phylogenetic tree inferred from the mitochondrial genome based on the 13 PCGs dataset.

Fig. 4 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 4. Mitochondrial genome organization of Platygaster robiniae and 11 species of Platygastroidea, compared with the ancestral pancrustacean mt genome organization. Note: tRNA genes are indicated by single letter amino acid codes, L1, L2, S1 and S2 denote tRNALeu(CUN), tRNALeu(UUR), tRNASer(AGN) and tRNASer(UCN), respectively. Genes are transcribed from left to right except those indicated by underlining. Gene movements, relative to the ancestral organization, are indicated with arrows.

Fig. 3 in Characterization of the complete mitochondrial genomes of Diplodiscus japonicus and Diplodiscus mehari (Trematoda: Diplodiscidae): Comparison with the members of the superfamily Paramphistomoidea and phylogenetic implication

Fig. 3. Relative synonymous codon usage (RSCU) of 12 protein coding genes of Diplodiscus japonicus and Diplodiscus mehari. The termination codon is not given.

Fig. 2 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 2. Amino acids (A) and relative synonymous codons (B) of protein-coding genes of the mitochondrial genome of Platygaster robiniae.

Fig. 2. A in Characterization of the complete mitochondrial genomes of Diplodiscus japonicus and Diplodiscus mehari (Trematoda: Diplodiscidae): Comparison with the members of the superfamily Paramphistomoidea and phylogenetic implication

Fig. 2. A + T content and nucleotide skew of genes, individual elements, and the complete mitogenome of 11 Paramphistomoidea trematodes.

Fig. 1 in The complete mitochondrial genome of Platygaster robiniae (Hymenoptera: Platygastridae): A novel tRNA secondary structure, gene rearrangements and phylogenetic implications

Fig. 1. Genetic map of the complete mitochondrial genome of Platygaster robiniae. Notes: the blue arrow represents the direction of gene transcription; the black peak represents the deviation of GC%; the purple and green peaks represent the deviation in GC skew; green refers to positive skew, and purple indicates negative skew. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)

Fig. 6 in Characterization of the complete mitochondrial genomes of Diplodiscus japonicus and Diplodiscus mehari (Trematoda: Diplodiscidae): Comparison with the members of the superfamily Paramphistomoidea and phylogenetic implication

Fig. 6. Phylogenetic relationships of Diplodiscus japonicus and Diplodiscus mehari with other 30 representative Digenea trematodes based on concatenated amino acid sequences of 12 protein coding genes analyzed by maximum likelihood (ML) and Bayesian inference (BI) using Gyrodactylus salaris as the outgroup. Statistical support values (Bootstrap/posterior probability) of ML/BI analysis are shown above the nodes. Circles indicate ML/BI = 100/1.0, other values are given above the nodes. Suborders and families are highlighted by individual colors. Accession numbers are given for each species at the end of each sequence. The scale bar corresponds to the estimated number of substitutions per site. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)

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Fig. 3 in The complete mitogenome of Argas vulgaris (Filippova, 1961) and its phylogenetic status in subgenus Argas (Acari: Argasidae)

Fig. 3. Phylogenetic tree of Argas species based on the 16S rRNA gene contained in the mitochondrial genome. Numbers at the nodes are bootstrap values of the ML analysis. The GenBank accession numbers are listed after the species names.

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Fig. 2 in The complete mitogenome of Argas vulgaris (Filippova, 1961) and its phylogenetic status in subgenus Argas (Acari: Argasidae)

Fig. 2. Evolutionary relationships among ticks of the Argasidae families. The phylogenetic tree of complete sequences of mitochondrial genomes. Numbers at the nodes are bootstrap values of the ML analysis. The GenBank accession numbers are listed after the species names.