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Figure 1 in High-Resolution Functional Imaging of Native Proteins using Force Distance Curve Based Atomic Force Microscopy
Figure 1. - Adult Trachipterus arcticus, about 1.8 m long, observed south of Pico Island, Azores, 18 Aug. 2013, 950 m deep.
TELL sample forcing data
<p>This dataset contains sample data forcing data for the Total Electricity Loads (TELL) model developed by the IM3 project. More information about the TELL model can be found at: https://immm-sfa.github.io/tell/user_guide.html.</p> <p>The sample dataset includes five years of historical weather data (2015-2019) and four years of sample future data (2039, 2059, 2079, and 2099). The 2015-2019 data is based on historical meteorology simulated by WRF. In contrast, the sample future data comes from IM3's future WRF runs under the RCP 8.5 climate scenario with SSP5 population forcing. The weather data was generated by the sequence of processing scripts that convert the meteorology from IM3's climate simulations using the Weather Research and Forecasting (WRF) model into input files ready for use in TELL. The first step in the processing chain spatially averages the gridded meteorology output from WRF into county mean values. The output of that processing step is a series of .csv files (one for every hour processed) with the county-mean value of six meteorological variables: T2, Q2, U10, V10, SWDOWN, and GLW. The second step then takes these county-level hourly values and population-weights them into an annual time-series for each of the balancing authorities (BAs) used in the TELL model. The code used to generate this sample weather data and more information about the wrf_to_tell processing pipeline can be found at: https://github.com/IMMM-SFA/im3components.</p> <p>The dataset also contains a sample output file from the United States version of the Global Change Analysis Model (GCAM-USA) and two future county-level population projections that can be used in the TELL quickstarter notebook.</p>
FIGURE 1 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 1 | Corydoras thanatos, holotype, MNRJ 53287, 33.2 mm SL, Novo Progresso Municipality, Pará State, Brazil, stream with unknown name tributary to the rio Jamanxim, rio Tapajós basin.
FIGURE 14 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 14 | Uncatalogued aquarium specimen of Corydoras psamathos photographed alive. Photo by Takayuki Shimizu.
FIGURE 5 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 5 | Map of the rio Tapajós and adjoining areas, showing the geographical distribution of Corydoras thanatos (black circle), C. hypnos (white star), and C. psamathos (red squares). Each symbol may represent more than one locality.
FIGURE 9 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 9 | Paratypes of Corydoras hypnos photographed alive, showing general color pattern and morphology in lateral view in (A) INPA 59775, 26.2 mm SL, (B) INPA 59775, 27.2 mm SL, (C) INPA 59775, 22.2 mm SL, (D) INPA 59774, 28.2 mm SL, and (E) INPA 59774, 22.6 mm SL, all from the rio Jamanxim, rio Tapajós basin, Pará State, Brazil.
FIGURE 13 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 13 | Paratypes of Corydoras psamathos photographed alive, showing general color pattern and morphology in lateral view in (A) INPA 59772, 23.7 mm SL, (B) INPA 59773, 30.2 mm SL, and (C) INPA 59773, 29.3 mm SL. Specimen (A) is from the rio Jamanxim, and specimens (B–C) are from the igarapé Santa Júlia, rio Tapajós basin.
FIGURE 4 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 4 | Uncatalogued aquarium specimens of Corydoras thanatos photographed alive, showing general color pattern and morphology of (A) a female specimen, and (B) a dimorphic male specimen. Photos by Hans Evers.
FIGURE 15 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 15 | Type locality of Corydoras psamathos, the igarapé Santa Júlia, a tributary to the rio Jamanxim, rio Tapajós basin in Pará State, Brazil.
FIGURE 12 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 12 | Lateral view of the head (A), lateral view of the dorsal-fin spine (B) and dorsal view of the left pectoral-fin spine (C) in cs paratype of Corydoras psamathos, CITL 387, 28.6 mm SL. Abbreviations: f: frontal, io1–2: infraorbital 1 and 2, iop: interopercle, n: nasal, op: opercle, pes: pterotic-extrascapular, pop: preopercle, prh: posterodorsal ridge of hyomandibula, pso: parieto-supraoccipital, sph: sphenotic. Scale bars = 1 mm.
FIGURE 3 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 3 | Paratypes of Corydoras thanatos photographed alive, showing general color pattern and morphology in lateral view in (A) INPA 59776, 14.2 mm SL, (B) INPA 59778, 21.9 mm SL, (C) INPA 59777, 29.0 mm SL, (D) INPA 59777, 30.0 mm SL, and (E) INPA 59777, 33.3 mm SL, all from tributaries to the rio Jamanxim, rio Tapajós basin.
FIGURE 7 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 7 | Corydoras hypnos, holotype, MNRJ 53288, 31.7 mm SL, Brazil, Pará State, Novo Progresso Municipality, rio Jamanxim, a tributary to the rio Tapajós basin.
FIGURE 8 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 8 | Lateral view of the head (A), lateral view of the dorsal-fin spine (B) and dorsal view of the left pectoral-fin spine (C) in cs paratype of Corydoras hypnos, CITL 385, 32.0 mm SL. Abbreviations: f: frontal, io1–2: infraorbital 1 and 2, iop: interopercle, n: nasal, op: opercle, pes: pterotic-extrascapular, pop: preopercle, prh: posterodorsal ridge of hyomandibula, pso: parieto-supraoccipital, sph: sphenotic. Scale bars = 1 mm.
FIGURE 6 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 6 | Natural habitat of Corydoras thanatos and C. hypnos, showing (A) the rio Jamanxim, type locality of C. hypnos, and one of its tributaries (B), type locality of C. thanatos, rio Tapajós basin in Pará State, Brazil.
FIGURE 11 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 11 | Corydoras psamathos, holotype, MNRJ 53289, 29.4 mm SL, Novo Progresso Municipality, Pará State, Brazil, igarapé Santa Júlia, a tributary to the rio Jamanxim, rio Tapajós basin.
FIGURE 2 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 2 | Lateral view of the head (A), lateral view of the dorsal-fin spine (B) and dorsal view of the left pectoral-fin spine (C) in cs paratype of Corydoras thanatos, CITL 383, 33.8 mm SL. Abbreviations: f: frontal, io1–2: infraorbital 1 and 2, iop: interopercle, n: nasal, op: opercle, pes: pterotic-extrascapular, pop: preopercle, prh: posterodorsal ridge of hyomandibula, pso: parieto-supraoccipital, sph: sphenotic. Scale bars = 1 mm.
FIGURE 10 in Science and hobby joining forces for the discovery of three new Corydoras (Siluriformes: Callichthyidae) from the rio Tapajós basin, Brazil, with comments on Corydoras sp. CW111
FIGURE 10 | Uncatalogued aquarium specimens of Corydoras hypnos photographed alive, showing general morphology and color pattern of (A) a specimen with brownish yellow ground color of body, and (B) and two specimens with greyish yellow ground color of body. Photos by Robert McLure (A) and Oliver Lucanus (B).
Bridge force waveforms obtained by systematically bowing various cello G-string models
<p>This dataset provides the waveforms of the bridge forces used in the research article titled “An experimental approach for comparing the influence of cello string type on bowed attack response” (see <em>JASA Express Letter </em>https://doi.org/10.1121/10.0034330 ). The data consists of audio recordings containing the force signals that the string exerts at the bridge (bridge force) during a systematic bowing action. The recordings capture bridge force signals at different bow forces and bow accelerations. Various cello G2-strings (98 Hz) models were used, as the main goal of this study was to investigate the influence of string properties on attack playability (how quickly the string responds to a bowing action). Details on the experimental procedure and methodology can be found in the related work.</p> <p>In general, this dataset offers resources for researchers interested in:</p> <ul> <li>Investigating bow-string interaction phenomena</li> <li>Analysing characteristics of bowed-string transients</li> <li>Developing or validating models of bowed-string instruments</li> </ul> <p><strong>Data Organization:</strong></p> <p>The folders of this repository are organised as follows:</p> <ul> <li><strong>waveforms </strong>This folder contains all the waveforms <ul> <li><strong>Model_X_Y </strong>The folder refers to a tested string<strong>.</strong> The cello string model is named X, from A to D, and the sample is numbered with Y: 1 or 2. For example, <em>Model_A_1 </em>is the folder containing the recording of the string model A and sample number 1. In the related work, only the samples numbered 2 were taken into account for the playability analysis. <br> <ul> <li><strong>yyyy-mm-dd(_r) </strong>Each subfolder refers to a measurement session in which the string was bowed at different bow forces and bow acceleration to populate a Guettler diagram. The day of the measurement session is indicated in the folder name: yyyy is the year, mm the month, and dd the day. Additionally, some measurements were performed reverting the order of measurements, and they are indicated with _r at the end of the name. The numbering used for indicating the Guettler diagrams in the related work, referred to it as “repetition n. 1, 2, …”, follows the chronological order reported in the name of these subfolders. <ul> <li><strong>Fb_nnn_a_mmm.wav </strong>The recording are single channel wav files sampled at 50kHz at a 64 bit rate. The bow force Fb and the bow acceleration a at which the bowing action was performed, is indicated in the file name. For example, a file named <em>Fb_3.76_a_1.96.wav </em>contains the waveform of the bridge force of the string bowed with an average bow force of 3.76 Newton and a constant acceleration of 2.96 m/s^2. </li> </ul> </li> </ul> </li> </ul> </li> </ul> <p><strong>Notes:</strong></p> <ul> <li>To obtain the bridge force in Newton, it is sufficient to multiply the signals by 10.</li> <li>Signals' length vary depending on the bow acceleration. Since the recordings capture the bridge force at a constant length bow stroke, higher accelerations lead to shorter recordings. Short recordings are around 0.22 seconds long, while longs last for about 0.9 seconds. </li> </ul>
Contemporary Software Modernization: Strategies, Driving Forces, and Research Opportunities - Supplementary Material
<p>This dataset contains the bibs, data extraction (raw) and the list of selected studies that are part of our paper entitled: "Contemporary Software Modernization: Strategies, Driving Forces, and Research Opportunities"</p>
MD simulations of bOG:DMPC in CHARMM36 force field
<p>CHARMM-GUI based series of simulations of beta-octyl-D-glucopyranoside (b-OG) mixed with DMPC at different dilutions. bOG:DMPC mol ratios are 1:1, 1:2, and 2:3. The only change in the force field was changing atom names from 2H2 to H2 in BOG residue to allow **gmx grompp** to recognize protons as protons when setting up constraints for bonds with hydrogens.</p> <p>Simulations are performed in highly hydrated state. I can name it "more than 50 water per two acyl chains"; "water per lipid" measure doesn't work here because bOG has just a single hydrocarbon tail.</p> <p>Trajectory length: 500 ns (20 ps step). T = 303 K. </p> <p>In this version we add *znd files where atom names are unique (changed in a new version of BOG.itp).</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.