Find research datasets worth reusing

Text-fig. 4. Measured section at the Omanitherium type locality. A–D are indurated beds highlighted in the stratigraphic section (figure seated on outcrop B provides a scale) (see Text-fig. 3). in Large Mammals From The Rupelian Of Oman - Recent Finds

Text-fig. 4. Measured section at the Omanitherium type locality. A–D are indurated beds highlighted in the stratigraphic section (figure seated on outcrop B provides a scale) (see Text-fig. 3).

Text-fig. 10. Lower incisors of Omanitherium dhofarense. a) ONHM TN 2017-19, left i/1, (a1 – stereo lingual view, a2 – distal view, a3 – mesial view, a4 – stereo labial view, a5 – apical view); b) ONHM TN 2017-43, left i/2 from Mohammed's i/2 site (b1 – stereo distal view, b2 – lingual view to show the anticlinal form of the cervix, b3 – labial view, b4 – mesial view, b5 – apical view) (scale bar 10 mm). in Large Mammals From The Rupelian Of Oman - Recent Finds

Text-fig. 10. Lower incisors of Omanitherium dhofarense. a) ONHM TN 2017-19, left i/1, (a1 – stereo lingual view, a2 – distal view, a3 – mesial view, a4 – stereo labial view, a5 – apical view); b) ONHM TN 2017-43, left i/2 from Mohammed's i/2 site (b1 – stereo distal view, b2 – lingual view to show the anticlinal form of the cervix, b3 – labial view, b4 – mesial view, b5 – apical view) (scale bar 10 mm).

Text-fig. 13. Stereo occlusal views of SQU 290, juvenile left mandible of Omanitherium dhofarense, part of the holotype (scale bar 5 cm). Table 2. Measurements (in mm) of the teeth of Omanitherium dhofarense. in Large Mammals From The Rupelian Of Oman - Recent Finds

Text-fig. 13. Stereo occlusal views of SQU 290, juvenile left mandible of Omanitherium dhofarense, part of the holotype (scale bar 5 cm). Table 2. Measurements (in mm) of the teeth of Omanitherium dhofarense.

Text-fig. 9. Fragmentary left m/3 with reconstructed outline of a bunodont hyracoid from the Ashawq Formation. a) lingual view, b) stereo occlusal view (scale bar 10 mm). in Large Mammals From The Rupelian Of Oman - Recent Finds

Text-fig. 9. Fragmentary left m/3 with reconstructed outline of a bunodont hyracoid from the Ashawq Formation. a) lingual view, b) stereo occlusal view (scale bar 10 mm).

opencc-by-4.0Aug 2019View details →

Text-fig. 7. a. Worn section through a horizontally bedded body-chamber and phragmocone, body-chamber showing oyster attached to inside of aperture as well as burrow mottling. Tape measure provides scale. b. Body-chamber and crushed phragmocone with body-chamber and phragmocone entirely filled with bioturbated matrix containing stringers of crinoid and molluscan debris. Flank of phragmocone encrusted by oysters. Tape measure for scale. c. Complex of Thallassinoides and Diplocraterion burrows associated with conch that has been eroded out by wave action. A few 'Ghostly' fragments of ammonite are also present. Original scope of the image approximately 400 mm. c. Verically embedded conch with largely intact septa and camera infilled with burrowed matrix containing crinoid debris. Tape measure for scale. in 'Cenoceras Islands' In The Blue Lias Formation (Lower Jurassic) Of West Somerset, Uk: Nautilid Dominance And Influence On Benthic Faunas

Text-fig. 7. a. Worn section through a horizontally bedded body-chamber and phragmocone, body-chamber showing oyster attached to inside of aperture as well as burrow mottling. Tape measure provides scale. b. Body-chamber and crushed phragmocone with body-chamber and phragmocone entirely filled with bioturbated matrix containing stringers of crinoid and molluscan debris. Flank of phragmocone encrusted by oysters. Tape measure for scale. c. Complex of Thallassinoides and Diplocraterion burrows associated with conch that has been eroded out by wave action. A few 'Ghostly' fragments of ammonite are also present. Original scope of the image approximately 400 mm. c. Verically embedded conch with largely intact septa and camera infilled with burrowed matrix containing crinoid debris. Tape measure for scale.

opencc-by-4.0Aug 2019View details →

Text-fig. 8. a. Shell belonging to one flank of the conch a horizontally bedded individual with sveral large oysters attached to its underside indicating that the shell was either originally vertical or was flipped from one surface to the other by turbulance. Approximately 300 mm across. b. Crushed individual showing oysters encrusting both flanks of the conch. 250 mm in diameter. c. Wave-worn conch showing oysters attached to the umbilicus, the venter and possibly the inside of the body-chamber. Tape measure for scale. d. Flank of conch with crinoid debris and oysters spread around its periphery. Scope of image approximately 350 mm. in 'Cenoceras Islands' In The Blue Lias Formation (Lower Jurassic) Of West Somerset, Uk: Nautilid Dominance And Influence On Benthic Faunas

Text-fig. 8. a. Shell belonging to one flank of the conch a horizontally bedded individual with sveral large oysters attached to its underside indicating that the shell was either originally vertical or was flipped from one surface to the other by turbulance. Approximately 300 mm across. b. Crushed individual showing oysters encrusting both flanks of the conch. 250 mm in diameter. c. Wave-worn conch showing oysters attached to the umbilicus, the venter and possibly the inside of the body-chamber. Tape measure for scale. d. Flank of conch with crinoid debris and oysters spread around its periphery. Scope of image approximately 350 mm.

opencc-by-4.0Dec 2019View details →

Text-fig. 3. Front views of hemi-maxillaries from Prémontré (Paris Basin, MP 10), showing the large infraorbitary foramen of a) SLP29PR-1312, stored in the Montpellier University collections (ISE-M), Hartenbergeromys hautefeuillei; b) SLP29PR-960, Pantrogna marandati. Scale bar 1 mm. in A Reevaluation Of The Taxonomic Status Of The Rodent Masillamys Tobien, 1954 From Messel (Germany, Late Early To Early Middle Eocene, 48-47 M.Y.)

Text-fig. 3. Front views of hemi-maxillaries from Prémontré (Paris Basin, MP 10), showing the large infraorbitary foramen of a) SLP29PR-1312, stored in the Montpellier University collections (ISE-M), Hartenbergeromys hautefeuillei; b) SLP29PR-960, Pantrogna marandati. Scale bar 1 mm.

opencc-by-4.0Aug 2018View details →

Text-fig. 11. Silutanispermum kvacekiorum gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a, b) Holotype (S170238), seed in oblique (a) and lateral (b) view showing large triangular hilar scar (hi) and transverse micropylar slit (mi). c) Oblique view of seed showing slightly raised raphal area (S174352); remains of mounting media (¤). d) Details of holotype showing triangular hilum (hi) and transverse micropylar slit in the exotesta (mi). e) Cut volume rendering of holotype (cut at yz1170) through the median plane showing hilum (hi) and micropylar slit (mi) lined by radially expanded exotestal cells. Scale bars = 500 µm (a–c); 250 µm (d, e). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal

Text-fig. 11. Silutanispermum kvacekiorum gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a, b) Holotype (S170238), seed in oblique (a) and lateral (b) view showing large triangular hilar scar (hi) and transverse micropylar slit (mi). c) Oblique view of seed showing slightly raised raphal area (S174352); remains of mounting media (¤). d) Details of holotype showing triangular hilum (hi) and transverse micropylar slit in the exotesta (mi). e) Cut volume rendering of holotype (cut at yz1170) through the median plane showing hilum (hi) and micropylar slit (mi) lined by radially expanded exotestal cells. Scale bars = 500 µm (a–c); 250 µm (d, e).

opencc-by-4.0Aug 2021View details →

T-Evos: A Large-Scale Longitudinal Study on CI Test Execution and Coverage Evolution

Description T-Evos is a dataset on test results and coverage evolution, covering 6,495 consecutive commits across 12 open-source Java projects.   Version 0.1.0 We have included the test results and code coverage data. The test results data has been combined into the `test_status.json` for ease of access at the root level of the repository. Each of the node zip files contains the code coverage data. In each of the zip files, the code coverage data folder is structured as followed: <ul> <li>project_name <ul> <li>commit_id <ul> <li>details <ul> <li>test_name.json (individual test coverage data)</li> <li>...</li> </ul> </li> <li>coverage.json (full test coverage data on commit_id)</li> </ul> </li> <li>surefire_test_method_dict.json (available test cases)</li> </ul> </li> <li>project_name.csv (commit build status [success/fail])</li> </ul> Note: the current version of the dataset includes temporary `project_cluster` folders that users might kindly ignore.

opencc-zeroDec 2018View details →

FIG. 2. — Souzalopesmyia polleti n in Souzalopesmyia Albuquerque, 1951 (Diptera: Muscidae): new species from South America with an updated phylogeny based on morphological evidence, in Touroult J. (ed.), "Our Planet Reviewed" 2015 large-scale biotic survey in Mitaraka, French Guiana.

FIG. 2. — Souzalopesmyia polleti n. sp.: A-D, ♂: sternite 5, dorsal view (A); epandrium, cercal plate and surstyli, dorsal view (B); epandrium, cercal plate and surstyli, lateral view (C); hypandrium and associated structures, lateral view (D); E-H, ♀: ovipositor, dorsal view (E); ovipositor, ventral view (F); spermatheca (G). Scale bars: 0.5 mm.

opencc-by-4.0Oct 2022View details →

Data for - Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics

Large-scale Corynebacterium glutamicum data set with Segmentation and Tracking Annotation We provide five time-lapse sequences with manually corrected segmentation and tracking annotations of growing C. glutamicum cultivations. The dataset contains more than 1.4 million cell observations in 29k cell tracks and 14k cell divisions. We provide videos of the annotations (videos.zip) and the dataset in <a href="http://celltrackingchallenge.net/datasets/">Cell Tracking Challenge</a> format (ctc_format.zip). In the videos, cell contours are rendered in yellow, cell links between frames are colored red and cell divisions, and their links are colored in blue. Data Acquisition Corynebacterium glutamicum ATCC 13032 was cultivated in BHI-medium at 30°C in this study. From and overnight preculture, the main culture was inoculated the next day with a starting OD600 of 0.05 and grown at 120 rpm to a OD600 of 0.25. A chip was fabricated, according to <a href="https://doi.org/10.1039/D0LC00711K">(Täuber et al., 2020)</a>, and fixed to the microscope’s holder. The main culture cells were transferred to monolayer growth chambers (height = 720 nm) on the microfluidic chip. Flow through the microfluidic device was mediated by pressure driven pumps with a pressure of 100 mbar on the medium reservoir. The time-lapse phase contrast images of five monolayer growth chambers were taken every minute using an inverted microscope (Nikon Eclipse Ti2) with a 100x oil emersion objective and a DS-QI2 camera (Nikon) at 15 % relative DIA-illumination intensity and 100 ms exposure time. The spatial image resolution is 0.072 μm/px.

opencc-by-4.0Sep 2022View details →

WHU-OHS: A benchmark dataset for large-scale Hyperspectral Image classification

The WHU-OHS dataset is made up of 42 OHS satellite images acquired from more than 40 different locations in China. The imagery has a spatial resolution of 10 m (nadir) and a swath width of 60 km (nadir). There are 32 spectral channels ranging from the visible to near-infrared range, with an average spectral resolution of 15 nm. We cropped each image into 512 × 512 pixels with a stride of 32. There are 4822, 513, and 2460 sub-images in the training, validation, and test sets, respectively. For transferability test, we choose eight pairs of OHS images, and each pair contains one source image (S) and one target image (T): S1: Changchun T1: Jilin S2: Wuxi T2: Shanghai S3: Guangzhou T3: Zhongshan S4: Xining T4: Lanzhou S5: Hetian T5: Kelamayi S6: Anyi T6: Nanchang S7: Changde T7: Changsha S8: Tianjin T8: Tangshan The 26 OHS images except for the eight pairs: O1: Baoding O2: Chongqing O3: Fujin O4: Huainan O5: Huhehaote O6: Jinzhong O7: Luliang O8: Manasi_1 O9: Manasi_2 O10: Nanmulin O11: Neimenggu O12: Qingdao O13: Qinghuangdao O14: Shawan O15: Shenyang O16: Shuozhou O17: Songpan O18: Taian O19: Tongjiang_1 O20: Tongjiang_2 O21: Wuzhong O22: Xundian O23: Xuzhou O24: Yidu O25: Zangzu O26: Zhongshan The image patches have been normalized and scaled by 10000 to reduce storage cost. Divide the pixel values by 10000 and then the image patches can be used directly.

dryad40/100

Input data to model multiple effects of large-scale deployment of grass in crop-rotations at European scale

This is the input dataset to a Python script (<a href="https://github.com/oskeng/MF-bio-grass">https://github.com/oskeng/MF-bio-grass</a>) used to model the effects of widespread deployment of grass in rotations with annual crops to provide biomass while remediating soil organic carbon (SOC) losses and other environmental impacts. For more information about the dataset and the study, see the original article: Englund, O., Mola-Yudego, B., Börjesson, P., Cederberg, C., Dimitriou, I., Scarlat, N., Berndes, G. Large-scale deployment of grass in crop rotations as a multifunctional climate mitigation strategy. GCB Bioenergy

opencc-zeroNov 2022View details →

dryad40/100

Data for: Zebra finch song ecology: monitoring of breeding, observational transects, focal and year-round acoustic recordings, and a large-scale simultaneous playback experiment

Male songbirds sing to establish territories and to attract mates. However, increasing reports of singing in non-reproductive contexts and by females show that song use is more diverse than previously considered. Therefore, alternative functions of song, such as social cohesion and synchronisation of breeding, by and large were overlooked even in such well-studied species as the zebra finch (Taeniopygia guttata). In these social songbirds only the males sing and pairs breed synchronously in loose colonies following aseasonal rain events in their arid habitat. As males are not territorial, and pairs form long-term monogamous bonds early in life, conventional theory predicts that zebra finches should not sing much at all; yet they do and their song is the focus of hundreds of lab-based studies. We hypothesise that zebra finch song functions to maintain social cohesion and to synchronise breeding. Here we test this idea using data from five years of field studies, including observational transects, focal and year-round audio recordings, and a large-scale playback experiment. We show that zebra finches frequently sing while in groups, that breeding status influences song output at the nest and at aggregations, that they sing year-round, and that they predominantly sing when with their partner, suggesting that song remains important after pair formation. Our playback reveals that song actively features in social aggregations as it attracts conspecifics. Together, these results demonstrate that birdsong has important functions beyond territoriality and mate choice, illustrating its importance in coordination and cohesion of social units within larger societies.

opencc-zeroDec 2021View details →

Text-fig. 49. Scanning electron microscope (SEM, a, b) and synchrotron radiation X-ray tomographic microscopy (SRXTM, c–e) images of "Foveolate seed sp. 1"; Catefica locality, Portugal. a) Lateral view of seed showing foveolate surface; note the slightly pointed hilar-micropylar region with the preservation of a presumed secretion (arrow) from the micropyle; b) Detail of seed surface showing shallow pitting and very faint outlines of the undulate anticlinal walls of the exotestal cells; c) Longitudinal section (volume rendering cut between orthoslices yz0450 and yz0460) through the middle of the seed showing the slightly pointed hilarmicropylar region and the rounded chalazal region; note the thick exotesta of the outer integument composed of thick-walled palisade-like cells (oi); note partial preservation of large cells of the nutritive tissue (nu) and the smaller cells of the embryo (em) at the micropylar end of the seed; d, e) Longitudinal sections (d, orthoslice xz0750, e, orthoslice yz0485) through middle of the seed perpendicular to each other showing the hilar-micropylar region with the preservation of a presumed secretion from micropyle (e, arrow), thick palisade-like cells of outer integument (oi), larger cells of the nutritive tissue (nu) and remains of the smaller cells of the embryo (em). Specimen, Catefica 49-S172316 (a–e). Scale bars = 300 Μm (a, c–e), 50 Μm (b). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms

Text-fig. 49. Scanning electron microscope (SEM, a, b) and synchrotron radiation X-ray tomographic microscopy (SRXTM, c–e) images of "Foveolate seed sp. 1"; Catefica locality, Portugal. a) Lateral view of seed showing foveolate surface; note the slightly pointed hilar-micropylar region with the preservation of a presumed secretion (arrow) from the micropyle; b) Detail of seed surface showing shallow pitting and very faint outlines of the undulate anticlinal walls of the exotestal cells; c) Longitudinal section (volume rendering cut between orthoslices yz0450 and yz0460) through the middle of the seed showing the slightly pointed hilarmicropylar region and the rounded chalazal region; note the thick exotesta of the outer integument composed of thick-walled palisade-like cells (oi); note partial preservation of large cells of the nutritive tissue (nu) and the smaller cells of the embryo (em) at the micropylar end of the seed; d, e) Longitudinal sections (d, orthoslice xz0750, e, orthoslice yz0485) through middle of the seed perpendicular to each other showing the hilar-micropylar region with the preservation of a presumed secretion from micropyle (e, arrow), thick palisade-like cells of outer integument (oi), larger cells of the nutritive tissue (nu) and remains of the smaller cells of the embryo (em). Specimen, Catefica 49-S172316 (a–e). Scale bars = 300 Μm (a, c–e), 50 Μm (b).

Text-fig. 37. Scanning electron microscope (SEM) images of "Stamen with tricolpate pollen sp. 1"; Catefica locality, Portugal. a) Stamen fragment showing the elongate, tetrasporangiate anther but with the base and apex poorly preserved; b–d) Pollen grains from stamen fragment in equatorial view showing the long colpi and well-developed, heterobrochate reticulum with very distinct large and small lumina; e) Detail of pollen wall showing orbicules with irregular projections; f) Detail of pollen wall showing smooth muri supported by short, densely spaced columellae. Specimen, Catefica 50-S170419 (a–f). Scale bars = 600 Μm (a), 6 Μm (b–d), 1.5 Μm (e, f). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms

Text-fig. 37. Scanning electron microscope (SEM) images of "Stamen with tricolpate pollen sp. 1"; Catefica locality, Portugal. a) Stamen fragment showing the elongate, tetrasporangiate anther but with the base and apex poorly preserved; b–d) Pollen grains from stamen fragment in equatorial view showing the long colpi and well-developed, heterobrochate reticulum with very distinct large and small lumina; e) Detail of pollen wall showing orbicules with irregular projections; f) Detail of pollen wall showing smooth muri supported by short, densely spaced columellae. Specimen, Catefica 50-S170419 (a–f). Scale bars = 600 Μm (a), 6 Μm (b–d), 1.5 Μm (e, f).

Text-fig. 32. Scanning electron microscope (SEM) images of "Stamen with monocolpate, reticulate pollen"; Catefica locality, Portugal. a) Stamen with four pollen sacs and an adhering bract (arrow); b) Pollen grains from stamen showing the large gaping, almost circular, aperture with a distinct aperture margin; c) Detail of pollen wall showing finely verrucate supratectal ornamentation and bases of broken columellae; d) Pollen grain showing the large gaping, rounded aperture; e) Pollen grains showing large, rounded aperture (left) and abraded reticulum exposing the surface of the foot layer and long columellae (right). Specimen, Catefica 49-S170144 (a–e). Scale bars = 600 Μm (a), 20 Μm (b), 6 Μm (d, e), 1.5 Μm (c). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms

Text-fig. 32. Scanning electron microscope (SEM) images of "Stamen with monocolpate, reticulate pollen"; Catefica locality, Portugal. a) Stamen with four pollen sacs and an adhering bract (arrow); b) Pollen grains from stamen showing the large gaping, almost circular, aperture with a distinct aperture margin; c) Detail of pollen wall showing finely verrucate supratectal ornamentation and bases of broken columellae; d) Pollen grain showing the large gaping, rounded aperture; e) Pollen grains showing large, rounded aperture (left) and abraded reticulum exposing the surface of the foot layer and long columellae (right). Specimen, Catefica 49-S170144 (a–e). Scale bars = 600 Μm (a), 20 Μm (b), 6 Μm (d, e), 1.5 Μm (c).

Text-fig. 27. Scanning electron microscope (SEM) images of stamens and pollen of Valvidistemon globiferus gen. et sp. nov.; Catefica locality, Portugal. a) Stamen in oblique lateral view showing laterally hinged valves, massive connective between the thecae and prominent, globular, apical extension of the connective; b) Stamen in oblique lateral view on the opposite side from (a) showing broken laterally hinged valves and distinct endothecium cells; c) Detail of stamen showing the large, longitudinally aligned cells of the massive connective, broad, poorly defined stamen base, and the laterally hinged valves of one of the thecae; d) Reticulate pollen attached to the inside of the anther wall. Specimen, Catefica 49-S107779 (holotype, a–d). Scale bars = 600 Μm (a, b), 100 Μm (c), 20 Μm (d). in The Early Cretaceous Mesofossil Flora Of Catefica, Portugal: Angiosperms

Text-fig. 27. Scanning electron microscope (SEM) images of stamens and pollen of Valvidistemon globiferus gen. et sp. nov.; Catefica locality, Portugal. a) Stamen in oblique lateral view showing laterally hinged valves, massive connective between the thecae and prominent, globular, apical extension of the connective; b) Stamen in oblique lateral view on the opposite side from (a) showing broken laterally hinged valves and distinct endothecium cells; c) Detail of stamen showing the large, longitudinally aligned cells of the massive connective, broad, poorly defined stamen base, and the laterally hinged valves of one of the thecae; d) Reticulate pollen attached to the inside of the anther wall. Specimen, Catefica 49-S107779 (holotype, a–d). Scale bars = 600 Μm (a, b), 100 Μm (c), 20 Μm (d).

opencc-zeroFeb 2023View details →

dryad40/100

Data for: Large-scale long-term passive-acoustic monitoring reveals spatiotemporal activity patterns of boreal bats

The distribution ranges and spatio-temporal patterns in the occurrence and activity of boreal bats are yet largely unknown due to their cryptic lifestyle and lack of suitable and efficient study methods. We approached the issue by establishing a permanent passive-acoustic sampling setup spanning the area of Finland to gain an understanding on how latitude affects bat species composition and activity patterns in northern Europe. The recorded bat calls were semi-automatically identified for three target taxa; Myotis spp., Eptesicus nilssonii or Pipistrellus nathusii and the seasonal activity patterns were modeled for each taxa across the seven sampling years (2015–2021). We found an increase in activity since 2015 for E. nilssonii and Myotis spp. For E. nilssonii and Myotis spp. we found significant latitude -dependent seasonal activity patterns, where seasonal variation in patterns appeared stronger in the north. Over the years, activity of P. nathusii increased during activity peak in June and late season but decreased in mid season. We found the passive-acoustic monitoring network to be an effective and cost-efficient method for gathering bat activity data to analyze spatio-temporal patterns. Long-term data on the composition and dynamics of bat communities facilitates better estimates of abundances and population trend directions for conservation purposes and predicting the effects of climate change.