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190 results for “molecular barcoding”
Investigation of spatial vulnerabilities of Bacterium Escherichia coli genome to spontaneous mutations by molecularly barcoded deep Sequencing
GEO Series GSE116453. Escherichia coli ATCC 8739. 1 samples. Type: Expression profiling by high throughput sequencing.
Fig. 4 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 4. Light micrographs showing overviews and details of (A–I) male holotype, NHMD-920097, and (J) female paratype, NHMD-920098, of Echinoderes abeli sp. nov. from Islas Marias, Mexico. (A) Ventral overview. (B) Segments 1 to 4, ventral view. (C) Segments 1 to 4, dorsal view. (D) Segments 4 to 6, ventral view. (E) Segment 5 to 7, dorsal view. (F) Segments 7 to 10, ventral view. (G) Segments 7 to 8, dorsal view. (H) Detail of segments 10 to 11, ventral view, showing male sexual dimorphism. (I) Detail of segments 10 to 11, dorsal view, showing male sexual dimorphism. (J) Segments 10 to 11, dorsal view, showing female sexual dimorphism. Abbreviations: ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvs, lateroventral spine; lvt, lateroventral tube; mdgco1, middorsal glandular cell outlet type 1; mds, middorsal spine; pdgco1, paradorsal glandular cell outlet type 1; pe, penile spine; pl placid; pr, protuberance; sdgco2, subdorsal glandular cell outlet type 2; sdss, subdorsal sensory spots; trp, trichoscalid plate. Digits after abbreviations in lvs, lvt and mds refer to segment number.
Fig. 8 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 8. Scanning electron micrographs showing overviews and details of Echinoderes wilberti sp. nov. (A) Ventral overview. (B) Segment 1 to 3, ventral view. (C) Segment 4 to 6, ventral view. (D) Segment 8, ventral view. (E) Segments 9 to 10, ventral view. (F) Segment 11, ventral view. (G) Segments 10 to 11, ventral view. (H) Dorsal overview. (I) Segments 1 to 4, dorsal view. (J) Segments 6 to 10, dorsal view. (K) Segments 10 to 11, dorsal view, showing male sexual dimorphism. (L) Segments 10 to 11, dorsal view, showing female sexual dimorphism; inset shows close-up of laterodorsal tube. Abbreviations: lat, lateral accessory tube; ldss, laterodorsal sensory spot; ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lvs, lateroventral spine; lvt, lateroventral tube; mlss, midlateral sensory spot; pe, penile spine; pl, placid; sdss, subdorsal sensory spot; ste, sternal extension; te, tergal extension; vlss, ventrolateral sensory spot; vmss, ventromedial sensory spot. Digits after abbreviations lvs and lvt refer to segment number.
Fig. 7 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 7. Light micrographs showing overviews and details of (A–G) female holotype, NHMD-1176454, female paratype (H–I) NHMD-1176456, and (J) male paratype, NHMD-1176455, of Echinoderes wilberti sp. nov. from Xcalak, Quintana Roo, Mexico. (A) Ventral overview. (B) Segments 1 to 2, ventral view. (C) Segments 1 to 2, dorsal view. (D) Segments 3 to 5, ventral view. (E) Segment 3 to 5, dorsal view. (F) Segments 6 to 8, ventral view. (G) Segments 6 to 8, dorsal view. (H) Segments 9 to 11, ventral view. (I) Segments 9 to 11, dorsal view, showing female sexual dimorphism. (J) Segments 10 to 11, dorsal view, showing male sexual dimorphism. Abbreviations: lat, lateral accessory tube, ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvs, lateroventral spine; lvt, lateroventral tube; mdgco1, middorsal glandular cell outlet type 1; pdgco1, paradorsal glandular cell outlet type 1; pe, penile spine; pl placid; pvb, paraventral bristles; sdt, subdorsal tube; ste, sternal extensions; te, tergal extensions; trp, trichoscalid plate; vmgco1, ventromedial glandular cell outlet type 1. Digits after abbreviations lvs and lvt refer to segment number.
Fig. 2 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 2. Line art illustrations of Echinoderes abeli sp. nov. (A) Male, dorsal view. (B) Male, ventral view. (C) Segments 10 to 11 in female, dorsal view. (D) Segments 10 to 11 in female, ventral view. Abbreviations: ldss, laterodorsal sensory spot; ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvgco1, lateroventral glandular cell outlet type 1; lvs, lateroventral spine; lvt, lateroventral tube; mdgco1, middorsal glandular cell outlet type 1; mds, middorsal spine; mlt, midlateral tube; pdgco1, paradorsal glandular cell outlet type 1; pdss, paradorsal sensory spot; pe, penile spines; pr, protuberance; pvgco1, paraventral glandular cell outlet type 1; sdgco2, subdorsal glandular cell outlet type 2; sdss, subdorsal sensory spot; si, sieve plate; slss, sublateral sensory spot; slt, sublateral tube; vlss, ventrolateral sensory spot; vmgco1, ventromedial glandular cell outlet type 1; vmss, ventromedial sensory spot.
Figure 8 in DNA barcoding and coalescent-based delimitation of endosymbiotic clevelandellid ciliates (Ciliophora: Clevelandellida): a shift to molecular taxonomy in the inventory of ciliate diversity in panesthiine cockroaches
Figure 8. Diagram of the morpho-molecular evolution of the family Clevelandellidae based on the present phylogenetic analyses. Molecular diagnostic characters are displayed for each marker in two rows: the upper row refers to the group in question (i.e. query group) and the lower row to the reference group, which includes all remaining clevelandellids and nyctotherids. Numbers correspond to the position of characters in the reference alignments. AZM, adoral zone of membranelles; MA, macronucleus; PM, paroral membrane.
Fig. 2 ITS phylogeny and genetic distances from the 13 in DNA barcoding of brown Parmeliae (Parmeliaceae) species: a molecular approach for accurate specimen identification, emphasizing species in Greenland
Fig. 2 ITS phylogeny and genetic distances from the 13 brown Pakmeliae species occurring in Greenland. a Cartoon representation of the maximum likelihood ITS topology obtained from 372 brown Pakmeliae specimens. Values at each node indicate non-parametric bootstrap support; only support values>50% are shown (complete ITS topology is shown in Supplementary Figure, S1). b Box plots of ITS genetic distances estimated for each species and all interspecific distances. 'CO' =Cetkakiella commixta; 'AG' =Melaielia agiata; 'HE' = M. hepatizoi; 'ST' = M. stygia; 'EL' = Melaiohalea elegaitula; 'EX' = M. exaspekatula; 'IN' = M. iifumata; 'OL' =M. olivacea; 'SE' =M. septeitkioialis; 'DI' =Moitaielia disjuicta; 'PA' = M.
Fig. 1 in DNA barcoding of brown Parmeliae (Parmeliaceae) species: a molecular approach for accurate specimen identification, emphasizing species in Greenland
Fig. 1 Brown Pakmeliae species occurring in Greenland. a – d Cetrarioid clade: a Cetkakiella commixta; b Melaielia agiata; c Melaielia hepatizoi; d Melaielia stygia. e – h The genus Melaiohalea: e Melaiohalea elegaitula; f Melaiohalea exaspekatula; g Melaiohalea iifumata; h Melaiohalea olivacea. i – l The genus Moitaielia: i
Expression analysis of DamP mRNAs using expressed molecular barcodes
GEO Series GSE53954. Saccharomyces cerevisiae; Saccharomyces cerevisiae S288C. 6 samples. Type: Expression profiling by array.
Molecular identification of Bactrocera passiflorae (Diptera: Tephritidae): challenge and solution for DNA barcoding
<p>Fruit flies cause significant damage to crop and fruit production worldwide. Therefore it is essential to identify these organisms to species level, however, immature stages are often impossible to be identified morphologically, thus the application of DNA barcoding has greatly assisted in species identification. Nuclear, mitochondrial pseudo-COI (NUMT) can be co-amplified with mitochondrial DNA when using generic primers and therefore impair the efficacy of DNA barcoding. This study detected two types of NUMTs from<em> B. passiflorae, </em>one of them is novel. Therefore the new finding will assist future species identification by avoiding misidentification using ambiguous NUMT sequences. In addition, this study have developed primers to target the COI gene of <em>B. passiflorae</em>, not the NUMT copies. The newly designed primers have demonstrated its efficiency in amplifying the Mt-COI of <em>B. passiflorae </em>and can be used in routine diagnostics.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.