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504 results for “pores”
FIGURE 1 in A new six-pored Amphisbaena (Squamata: Amphisbaenidae) from the coastal zone of northeast Brazil
FIGURE 1. Amphisbaena littoralis sp. nov. (holotype, URCA-H 3540). From top to bottom: dorsal, lateral and ventral views of the head. Scale bar = 2 mm.
FIGURE 4 in A new six-pored Amphisbaena (Squamata: Amphisbaenidae) from the coastal zone of northeast Brazil
FIGURE 4. Geographical distribution of Amphisbaena littoralis sp. nov. and Amphisbaena heathi in the state of Rio Grande do Norte: Black star—Type locality of Amphisbaena littoralis sp. nov. and new distributional record of Amphisbaena heathi, muncipality of Guamaré; Red star—Type locality of Amphisbaena heathi, muncipality of João Camara; Black dot—new distributional record of Amphisbaena heathi and distribution of Amphisbaena littoralis sp. nov., Municipality of Macau,; Red dot– distribution of Amphisbaena heathi in Freire (1996), Municipality of Natal. Yellow = Caatinga Biome, Light Green = Atlantic Forest, Orange = Cerrado, Dark green = Amazon.
FIGURE 3. A in A new six-pored Amphisbaena (Squamata: Amphisbaenidae) from the coastal zone of northeast Brazil
FIGURE 3. A) Amphisbaena littoralis sp. nov., live specimen; B) Habitat in which the new species was found in Guamaré municipality, Rio Grande do Norte State, Brazil.
FIGURE 2 in A new six-pored Amphisbaena (Squamata: Amphisbaenidae) from the coastal zone of northeast Brazil
FIGURE 2. Amphisbaena littoralis sp. nov. (holotype, URCA-H 3540), ventral view of cloacal region, showing the six precloacal pores.
FIGURE 4 in A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena
FIGURE 4. Ventral view of cloacal region of Amphisbaena filiformis sp. nov. (MPEG 27919). The arrow points to the autotomic annulus.
FIGURE 8 in A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena
FIGURE 8. Relationship between snout-vent length and body width in millimeters of six species of the Amphisbaena with two precloacals pores. Circles: Amphisbaena anaemariae; Asterisk: A. brevis; Plusses: A. crisae; Triangles: A. filiformis sp. nov.; Squares: A. leeseri; and Stars: A. silvestrii.
FIGURE 2 in A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena
FIGURE 2. Dorsal (A), lateral (B) and ventral (C) views of the head of Amphisbaena filiformis sp. nov. holotype (MPEG 27916).
FIGURE 7 in A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena
FIGURE 7. "Floresta Ombrófila Aberta das Terras Baixas" with palm tree forest in center, municipality of Babaçulândia, State of Tocantins, where the holotype of Amphisbaena filiformis sp. nov. was collected.
FIGURE 6 in A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena
FIGURE 6. Amphisbaena filiformis sp. nov. in life (not identified specimen of type series) from Babaçulândia municipality, State of Tocantins, Brazil. Photo by C.E.D. Cintra.
FIGURE 3 in A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena
FIGURE 3. Dorsal view of midbody annulus of Amphisbaena filiformis sp. nov. (MPEG 27918). The arrow points to the lateral (1 and 3) and dorsal (2) sulci.
FIGURE 1 in A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena
FIGURE 1. Geographic distribution of Amphisbaena filiformis sp. nov. from Brazilian Cerrado. Red star represents distribution of paratypes in the right bank of Tocantins River, Estreito municipality, State of Maranhão. Red star with a black central dot represents type-locality in the left bank of Tocantins River, Babaçulândia municipality, State of Tocantins; Brazil.
FIGURE 5 in A new two-pored species of Amphisbaena (Squamata, Amphisbaenidae) from the Brazilian Cerrado, with a key to the two-pored species of Amphisbaena
FIGURE 5. Oblique view of the tail of Amphisbaena filiformis sp. nov. (MPEG 27919). Note the vertical keel of the extreme tip.
Pore-Opening and Ion-Conduction Mechanism in Channelrhodopsins C1C2, ChR2, and iChloC by Computational Electrophysiology and Constant-pH Simulations
<p>The simulation run input files, comprising the starting configuration and all necessary parameters for performing the<br>MD simulations.</p>
Molecular dynamics trajectories related to manuscript: SARS-CoV-2 nsp3 and nsp4 are minimal constituents of a pore spanning replication organelle
<p>This dataset contains two folders, each with sequentially numbers coordinates files for all-atom molecular dynamics trajectories related to the manuscript "SARS-CoV-2 nsp3 and nsp4 are minimal constituents of a pore spanning replication organelle" by Zimmermann et al. Each folder contains PDB and PSF files specifying the components of each system depicted in Fig. S10 of that manuscript as well as 200 sequentially named DCD files, each containing 5 nanoseconds of a 1 microsecond trajectory.</p>
Temporal and Spatial Evolution of Pore Scale PDFs of Solute Concentrations to Study Incomplete Mixing in Porous Media
<p>C at M.I for Pe100 (sample): Sample (vector) of pore scale concentrations at Pe100 and five different times.</p> <p>C Chunk for All Pe (sample): Sample (3D block) of pore scale concentrations at the mixing interface for six Peclet number cases ( 10, 32, 100, 316, 1000, 3160) and at 11 different time steps extracted from the full size column. This is extracted using the semi-analytical appraoch to eliminate boundary effect.</p> <p>meanvelocities: Matlab Data of the pore scale longitudinally averaged velocity.</p> <p>MLE: Result of maximum likelihood estimation analysis for 18 different distribution functions (Excel file)</p> <p>SemiAnalytical: Matlab code for the implementation of the semi-analytical apporach.</p> <p>gamma_incomplete: Incomplete Gamma function required for the SemiAnalytical code.</p>
Comparative Pore Structure and Dynamics for Bacterial Microcompartment Shell Protein Assemblies in Sheets or Shells
<blockquote> <p>Input structures for a manuscript, along with selected output data and structures. This directory structure contains a cut-down copy of the directories used to generate the simulation data and the analysis. In order to make this fit into the 50GB Zenodo limit, it was constructed with the following tar commands:<br><br>For <a href="../api/records/10800570/draft/files/bmc_shell_vs_sheet.tar.gz/content" target="_blank" rel="noopener noreferrer">bmc_shell_vs_sheet.tar.gz:</a><br><code>tar -zcvf bmc_shell_vs_sheet.tar.gz --exclude="*BAK" --exclude="*#" --exclude="*log" --exclude="*xsc" --exclude="*coor" --exclude="*vel" --exclude="*[0-9].out" --exclude="*old" --exclude="*dcd" --exclude="*tmp" --exclude="*ppm" --exclude="*png" --exclude="*pdf" --exclude="*catchy*" --exclude="*svg" --exclude="*restart*" --exclude="*history" --exclude="core.*" --exclude="FFTW_NAMD*" --exclude="*avi" --exclude="*mp4" --exclude="*pcad*" --exclude="*pcaa*" --exclude="*ammn*" --exclude="*amnp*" --exclude="*amsa*" --exclude="*dtnt*" --exclude="*mthl*" --exclude="*ntrt*" --exclude="*.inp" --exclude="*.sph" --exclude="structures" --exclude="test-sim" --exclude="test-sim-flatten-constantarea" --exclude="*.dx"</code><br><br>For <a href="../api/records/10800570/draft/files/bmcflattenmdff.tar.gz/content" target="_blank" rel="noopener noreferrer">bmcflattenmdff.tar.gz</a>:<br><code>tar --exclude="emdensitymap" --exclude="emstructures" --exclude="forSaad" --exclude="*dcd" --exclude="*ppm" --exclude="*mp4" --exclude="*png" --exclude="*old" --exclude="*BAK" --exclude="*txt" --exclude="animations" --exclude="apbs*" -zcvf bmcflattenmdff.tar.gz</code><br><br>The bmc_shell_vs_sheet has the folder test-sim-curved for shell simulation while test-sim-flatten-noconstantratio for sheet simulation.<br>Pore analysis for shell can be found in hole2 and for sheet in hole-flatten<br>Analysis has been done with various *py *sh and *tcl files<br>For visualizing trajectories in VMD "<strong>load*.tcl</strong>" scripts were used.<br><br>The bmcflattenmdff contains all the scripts needed for converting the shell topology to sheet.</p> </blockquote>
Pore-Scale Modeling of Carbon Dioxide and Hydrogen Transport during Geologic Gas Storage
<p>This file contains the data discussed in association with our journal submission. We discuss pore-scale simulations to compare CO2 and H2 invasion at subsurface conditions in the context of geologic storage.</p>
Reproducing nonlinear ground response and pore pressure variations using in-situ soil properties
<p>The zip file named 'Seismic and pore water pressure data.zip' contains all the seismic and pore water pressure data in our study.</p><p>The zip file named 'WLA model.zip' contains the numerical models used in our study.</p>
Harnessing Pore Size in COF Membranes: A Concentration Gradient-Driven Molecular Dynamics (CGD-MD) Study on Enhanced H₂/CH₄ Separation
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Free Energy of Membrane Pore Formation and Stability from Molecular Dynamics Simulations
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.