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247 results for “sponge association”
FIGURE 4 in Typtonomenaeus formosanus gen. et sp. nov., a new sponge-associated pontoniine shrimp (Crustacea: Decapoda: Palaemonidae: Pontoniinae) from northern Taiwan
FIGURE 4. Typtonomenaeus formosanus gen. et sp. nov., holotype, non-ovigerous female: a—pereiopod I; b—same, chela; c—major pereiopod II; d—minor pereiopod II; e—pereiopod III; f—same, distal part of propodus and dactylus; g—pereiopod IV; h—pereiopod V.
FIGURE 3 in Typtonomenaeus formosanus gen. et sp. nov., a new sponge-associated pontoniine shrimp (Crustacea: Decapoda: Palaemonidae: Pontoniinae) from northern Taiwan
FIGURE 3. Typtonomenaeus formosanus gen. et sp. nov., holotype, non-ovigerous female: a—mandible; b—maxillula; c— maxilla; d—maxilliped I; e—maxilliped II; f—maxilliped III.
Metagenomic and metatranscriptomics data for Bathymodiolus mussel and deep-sea sponge associated symbionts deposited in NCBI, IMG and other databases
<p>Metagenomic data for the sulfur- and methane-oxidizing symbionts of <em>Bathymodiolus</em> mussels and different sponge species deposited in the Integrated Microbial Genomes (IMG) database of the DOE Joint Genome Institute (http://img.jgi.doe.gov/) and NCBI until October 2018</p>
Supplementary material 3 from: Kise H, Nishijima M, Iguchi A, Minatoya J, Yokooka H, Ise Y, Suzuki A (2023) A new hexactinellid-sponge-associated zoantharian (Porifera, Hexasterophora) from the northwestern Pacific Ocean. ZooKeys 1156: 71-85. https://doi.org/10.3897/zookeys.1156.96698
Bayesian-inference tree based on combined dataset of COI, 12S-rDNA, 16S-rDNA, 18S-rDNA, 28S-rDNA, and ITS-rDNA sequences. Number at nodes represent Bayesian posterior probabilities (>0.95)
Supplementary material 4 from: Kise H, Nishijima M, Iguchi A, Minatoya J, Yokooka H, Ise Y, Suzuki A (2023) A new hexactinellid-sponge-associated zoantharian (Porifera, Hexasterophora) from the northwestern Pacific Ocean. ZooKeys 1156: 71-85. https://doi.org/10.3897/zookeys.1156.96698
Maximum-likelihood tree based on ITS-rDNA sequences. Number at nodes represent ML bootstrap values (>50% are shown)
Fig. 6 in Feature-based molecular networking-guided discovery of siderophores from a marine mesophotic zone Axinellida sponge-associated actinomycete Streptomyces diastaticus NBU2966
Fig. 6. NMR calculation results of 8. (a) Linear correlation plots of computed vs experimental 13C and 1H NMR chemical shifts. (b) Relative errors between the computed NMR values and experimental values. (c) The evaluation of NMR calculation results with statistical parameter MAE and CMAE.
Fig. 5 in Feature-based molecular networking-guided discovery of siderophores from a marine mesophotic zone Axinellida sponge-associated actinomycete Streptomyces diastaticus NBU2966
Fig. 5. NMR calculation results of two plausible isomers of 6. (a) Linear correlation plots of experimental vs computed 13C NMR chemical shifts. (b) Relative errors between the computed 13C NMR values of two potential structures and experimental 13C NMR chemical shifts. (c) The evaluation of calculation results with statistical parameter ME (Maximum Error), CME (Corrected Maximum Error), and CMAE (Corrected Mean Absolute Error).
Fig. 2 in Feature-based molecular networking-guided discovery of siderophores from a marine mesophotic zone Axinellida sponge-associated actinomycete Streptomyces diastaticus NBU2966
Fig. 2. Structures of siderophores 1–10. Three types of iron-chelating moieties are marked with blue, red, and purple, respectively. Previously undescribed natural products are highlighted with red subscript numbers. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Feature-based molecular networking-guided discovery of siderophores from a marine mesophotic zone Axinellida sponge-associated actinomycete Streptomyces diastaticus NBU2966
Fig. 1. Detected chemistries of the EtOAc extract of Streptomyces sp. NBU2966 as generated by LC-MS/MS, which was analyzed using NAP, Dereplicator+, and MolNetEnhancer workflow via the GNPS platform. With this network, wherein nodes represent a precursor ion, and its size is scaled to signal intensity and the thickness of edge between nodes suggests the similarity of fragment pattern. (a) Structural annotation for molecular families, wherein the color of nodes denotes the structural annotation at the superclass level by NAP. (b) Observation of molecular family A allows highlighting dereplicated (R)-2-(2-Hydroxyphenyl)-4-hydroxymethyl-4,5-dihydrothiazole. (c) Observation of molecular family B allowed to highlighting dereplicated pyochelin methyl ester. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)
Fig. 4 in Prenylated phenylbutyrolactones from cultures of a marine sponge-associated fungus Aspergillus flavipes KUFA1152
Fig. 4. Proposed biosynthetic pathways for the formation of 5 and 7 through a dichotomy of prenylation of 3 by dimethylallyl pyrophosphate (DMAPP), catalyzed by prenyltransferases.
Fig. 3 in Prenylated phenylbutyrolactones from cultures of a marine sponge-associated fungus Aspergillus flavipes KUFA1152
Fig. 3. Experimental ECD spectrum (solid line, left axis) of 7 in acetonitrile and theoretical ECD spectrum (dotted line, right axis) of its (2S) configuration.
Fig. 2 in Prenylated phenylbutyrolactones from cultures of a marine sponge-associated fungus Aspergillus flavipes KUFA1152
Fig. 2. Model of the most abundant conformation of 7 (B3LYP/6-31G(d) lowest energy conformer) in its (2S) configuration, as assigned by ECD. The line box marks the fragment whose conformation was set to unchange, although free to be optimized by the several methods used.
Figure 9 from: Short G, Trevor-Jones A (2020) Stigmatopora harastii, a new species of pipefish in facultative associations with finger sponges and red algae from New South Wales, Australia (Teleostei, Syngnathidae). ZooKeys 994: 105-123. https://doi.org/10.3897/zookeys.994.57160
Figure 9 Stigmatopora harastii in situ A–C male D female, The Gutter, Bass Point, Shellharbour, NSW, Australia, 18 meters depth, 17 Feb 2017 (photographs: Craig Taylor).
Figure 8 from: Short G, Trevor-Jones A (2020) Stigmatopora harastii, a new species of pipefish in facultative associations with finger sponges and red algae from New South Wales, Australia (Teleostei, Syngnathidae). ZooKeys 994: 105-123. https://doi.org/10.3897/zookeys.994.57160
Figure 8 Stigmatopora harastii in situ, male-female pair A lateral view B anterior view, Minmi Trench, Botany Bay, NSW, Australia, 18 meters depth, 17 February 2019 (photographs: Duncan Heuer).
Figure 7 from: Short G, Trevor-Jones A (2020) Stigmatopora harastii, a new species of pipefish in facultative associations with finger sponges and red algae from New South Wales, Australia (Teleostei, Syngnathidae). ZooKeys 994: 105-123. https://doi.org/10.3897/zookeys.994.57160
Figure 7 Stigmatopora harastii in situ, male, The Leap, Kurnell, Botany Bay, NSW, Australia, 12 meters depth, 03 October 2018 (photograph: Andrew Trevor-Jones).
Figure 6 from: Short G, Trevor-Jones A (2020) Stigmatopora harastii, a new species of pipefish in facultative associations with finger sponges and red algae from New South Wales, Australia (Teleostei, Syngnathidae). ZooKeys 994: 105-123. https://doi.org/10.3897/zookeys.994.57160
Figure 6 Aerial view of the scuba dive site The Steps, Kurnell, Botany Bay, NSW, Australia A shore and entrance B inshore boulders (photographs: Michael McFadyen).
Figure 4 from: Short G, Trevor-Jones A (2020) Stigmatopora harastii, a new species of pipefish in facultative associations with finger sponges and red algae from New South Wales, Australia (Teleostei, Syngnathidae). ZooKeys 994: 105-123. https://doi.org/10.3897/zookeys.994.57160
Figure 4 Stigmatopora harastii in situ, ASM I.47267 paratypes, female, The Steps, Kurnell, Botany Bay, NSW, Australia at 11–12 meters depth, 06 June 2017 (photographs: David Harasti).
Figure 3 from: Short G, Trevor-Jones A (2020) Stigmatopora harastii, a new species of pipefish in facultative associations with finger sponges and red algae from New South Wales, Australia (Teleostei, Syngnathidae). ZooKeys 994: 105-123. https://doi.org/10.3897/zookeys.994.57160
Figure 3 Stigmatopora harastii in situ, ASM I. 49510-001, holotype, male A (right individual) B (left individual); The Steps, Kurnell, Botany Bay, NSW, Australia, 13.5 meters depth, 18 June 2020. The male holotype was photographed with a paired female individual, which was not collected. Note the large cluster of distinct red spots extending posteriad on venter of anterior trunk rings in the male (photographs: Andrew Trevor-Jones).
Figure 2 from: Short G, Trevor-Jones A (2020) Stigmatopora harastii, a new species of pipefish in facultative associations with finger sponges and red algae from New South Wales, Australia (Teleostei, Syngnathidae). ZooKeys 994: 105-123. https://doi.org/10.3897/zookeys.994.57160
Figure 2 Stigmatopora harastii, preserved directly after collection, paratypes, female A ASM I.47267-001, 136.3 mm SLB ASM I.47267-002, 138.2 mm SL; Australia: NSW, Botany Bay, Kurnell (photograph: Kerryn Parkinson).
Figure 11 from: Short G, Trevor-Jones A (2020) Stigmatopora harastii, a new species of pipefish in facultative associations with finger sponges and red algae from New South Wales, Australia (Teleostei, Syngnathidae). ZooKeys 994: 105-123. https://doi.org/10.3897/zookeys.994.57160
Figure 11 Fucoid algae and seagrass associating members of Stigmatoporain situAS. nigra, male, Nelson Bay, NSW (photograph: David Harasti) BS. nigra, female, Port Hughes, Gulf St Vincent, South Australia (photograph: David Muirhead) CS. argus, Port Hughes, Gulf St Vincent, South Australia (photograph: Graham Short) DS. narinosa, Port Hughes, Gulf St Vincent, South Australia (photograph: Graham Short) ES. macropterygia, Winstones Cove, North Island, New Zealand (photograph: Nick Shears).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.