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215 results for “summary statistics”
Figure 2 from: Dunlop J, Penney D (2012) Summary statistics for fossil spider species taxonomy. ZooKeys 192: 1-13. https://doi.org/10.3897/zookeys.192.3093
Figure 2 - The numbers of described fossil spider species by year. Note that data for the 126 years where no fossil spider species were described are not included. Hence, the actual lull periods between peaks of activity are artificially shortened in this graph. For example, the period between the first described fossil spider in 1822 and the next data plot is actually 32 years. Squares = newly described fossil spider species, triangles = cumulative number of described fossil spider species. Data derived from Dunlop et al. (2012).
Figure 3 from: Dunlop J, Penney D (2012) Summary statistics for fossil spider species taxonomy. ZooKeys 192: 1-13. https://doi.org/10.3897/zookeys.192.3093
Figure 3 - The cumulative number of newly described extant spider species this century. Data from Platnick (2001–2012). Total number of described extant species = 42,751 (Platnick 2012).
Figure 1 from: Dunlop J, Penney D (2012) Summary statistics for fossil spider species taxonomy. ZooKeys 192: 1-13. https://doi.org/10.3897/zookeys.192.3093
Figure 1 - The evolutionary tree of spiders (updated from Penney and Selden 2011: data table 4) showing known ranges of spider families based on described fossils and predicted ranges of sister taxa based on their phylogenetic relationships (strictly fossil families inserted in approximate positions as per hypothesized relationships proposed in the literature, but not based on any cladistic analysis). Note that this is a highly dynamic figure, with known ranges and predicted ranges changing frequently as a result of new fossil discoveries, changes in phylogenetic hypotheses, revised dating of various deposits and even potentially through revised dating of geological periods and epochs. Researchers should check Dunlop et al. (currently 2012 and updated every six months) for the most recent data on the oldest fossils of each family and genus.
Curated GWAS summary statistics on European ancestry on 19 blood count traits and glycemic traits (hg38)
<p>Genome wide curated summary statistics on 19 blood count traits and glycemic traits</p> <p>File format is the inittable format intended to be used with the Joint Analysis of Summary Statistics (JASS), which allows to perform multi-trait GWAS:</p> <p>https://gitlab.pasteur.fr/statistical-genetics/jass</p> <p>GWAS of hematological traits originate from Chen et al paper and were downloaded from the GWAS Catalog (<a href="https://www.ebi.ac.uk/gwas/publications/32888493#study_panel">https://www.ebi.ac.uk/gwas/publications/32888493#study_panel</a>). GWAS of glycemic traits come from the <a href="https://www.zotero.org/google-docs/?S1MIfx">(18)</a> study downloadable from GWAS Catalog (<a href="https://www.ebi.ac.uk/gwas/publications/34059833">https://www.ebi.ac.uk/gwas/publications/34059833</a>).</p>
Data from: Spatially explicit summary statistics for historical population genetic inference
Open the record for dataset details and reuse information.
Data from: AMAS: a fast tool for large alignment manipulation and computing of summary statistics
Open the record for dataset details and reuse information.
S-NPP CrIS IMG: Collocated VIIRS level 1 / cloud mask statistical summary V2 (SNDRSNCrISL1BIMG) at GES DISC
The Cross-track Infrared Sounder (CrIS) Level 1B Normal Spectral Resolution (NSR) data files contain radiance measurements along with ancillary spacecraft, instrument, and geolocation data of the CrIS instrument on the Suomi National Polar-orbiting Partnership Project (SNPP). In December 2014, the CrIS instrument on the SNPP satellite doubled the spectral resolution of shortwave infrared data being transmitted to the ground. In November 2015, additional points were included at the ends of the longwave and shortwave interferograms to improve the quality of the calibration. Prior to November 2, 2015 the data are only available in Normal Spectral Resolution, after November 2, 2015 at 16:06 UTC, the data are available in both NSR and Full Spectral Resolution (FSR). The NSR files have 1,317 channels: 163 shortwave channels from 3.9 to 4.7 microns (2555 to 2150 cm-1), 437 midwave channels from 5.7 to 8.05 microns (1752.5 to 1242.5 cm-1), and 717 longwave channels from 9.1 to 15.41 microns (1096.25 to 648.75 cm-1). Each CrIS field-of-regard (FOR) contains 9 field-of-views (FOVs) arranged in a 3X3 array. The Level 1B files contain 30 FORs in the cross track direction and 45 in the along track direction. Data products are constructed on six minute boundaries.The Visible Infrared Imaging Radiometer Suite (VIIRS) has 22 imaging and radiometric bands covering wavelengths from 0.41 to 12.5 microns. It provides the sensor data records for clouds, sea surface temperature, ocean color, and others. This IMG product primarily contains statistics of the VIIRS cloud mask and VIIRS L1B data within each CrIS footprint..
JPSS-1 CrIS IMG: Collocated VIIRS level 1 / cloud mask statistical summary V2 (SNDRJ1CrISL1BIMG) at GES DISC
The Cross-track Infrared Sounder (CrIS) Level 1B Full Spectral Resolution (FSR) data files contain radiance measurements along with ancillary spacecraft, instrument, and geolocation data of the CrIS instrument on the Joint Polar Satellite System-1 (JPSS-1) platform. This platform is also know as NOAA-20 (National Oceanic and Atmospheric Administration). The JPSS-1 mission with CrIS instrumentation is a follow-on to the Suomi National Polar-orbiting Partnership (SNPP) mission. The CrIS instrumentation and data processing system is nearly identical to that of the SNPP satellite. /The FSR files have 2,223 channels (*2211 apodized channels): 637 (*633) shortwave channels from 3.9 to 4.7 microns (2555 to 2150 cm-1), 869 (*865) midwave channels from 5.7 to 8.05 microns (1752.5 to 1242.5 cm-1), and 717 (*713)longwave channels from 9.1 to 15.41 microns (1096.25 to 648.75 cm-1). Each CrIS field-of-regard (FOR) contains 9 field-of-views (FOVs) arranged in a 3X3 array. The Level 1B files contain 30 FORs in the cross track direction and 45 in the along track direction. Data products are constructed on six minute boundaries.The Visible Infrared Imaging Radiometer Suite (VIIRS) has 22 imaging and radiometric bands covering wavelengths from 0.41 to 12.5 microns. It provides the sensor data records for clouds, sea surface temperature, ocean color, and others. This IMG product primarily contains statistics of the VIIRS cloud mask and VIIRS L1B data within each CrIS footprint.
Input data files for RSS-NET analysis of simulated GWAS summary statistics and B cell regulatory network
<p>Details of these data files are provided in https://suwonglab.github.io/rss-net/wtccc_bcell.</p> <p>Contact:<code> xiangzhu[at]psu.edu </code></p>
Chemotherapy Toxicity TWAS Summary Statistics
<p>TWAS Summary Statistics</p>
GWAS summary statistics of resistance to M. tuberculosis infection in three populations
<p>GWAS summary statistics of resistance to M. tuberculosis infection in Vietnam, 185 uninfected vs 353 infected subjects, maf >0.05 and info >0.8 (GEMMA output)</p> <p>GWAS summary statistics of resistance to M. tuberculosis infection in Vietnam, France and South Africa (METASOFT output)</p> <p>preprint: https://doi.org/10.1101/2020.07.14.20152801</p>
Summary Statistics - Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations
<p>Summary Statistics - Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations</p> <p>Files contain imputation quality and allele frequency for each imputed variant. A file exists for each method and add-on tag selection setting (Setting 1 or Setting 2)</p>
Summary statistics - Multi-ancestry GWAS of asthma exacerbations
<p>Summary statistics corresponding to the manuscript titled "Multi-ancestry genome-wide association study of asthma exacerbations" (doi: https://doi.org/10.1111/pai.13802) published in<em> Pediatric Allergy and Immunology.</em></p> <ul> <li>RSID: SNP ID (chromosome: hg19<em> </em>position :reference allele: tested allele)</li> <li>STUDY: Number of ethnic groups contributing to the multi-ancestry meta-analysis</li> <li>BETA_meta: Regression coefficient</li> <li>SEBETA_meta: Standard error for the regression coefficient</li> <li>PVALUE_meta: P-value </li> <li>PVALUE_Q: P-value of Cochran's Q.</li> </ul>
EWAS of lung function in Latinos with asthma - Summary Statistics
<p>Summary statistics generated for the manuscript entitled <strong>"Epigenome-wide association study of lung function in Latino children and youth with asthma"</strong></p> <p>Our aim was to identify DNA methylation signals associated with lung function in Latino youth with asthma and validate previous epigenetic signals from non-Latino populations. For that, we performed multiple epigenome-wide association studies (EWAS) of lung function measurements analyzing whole blood from 250 Puerto Rican (PR) and 148 Mexican American (MEX) youth with asthma from the Genes-Environment and Admixture in Latino Americans (GALA II) study. The following measurements were evaluated Pre- and post- albuterol administration: Forced expiratory volume in one second (FEV1.Meas), forced vital capacity (FVC.Meas) and their ratio (FEV1.FVC.Meas). DNA methylation was profiled with the Infinium EPIC BeadChip or the Infinium HumanMethylation450 BeadChip array (Illumina, San Diego, CA, USA). The association of methylation beta-values and raw PFT values (in liters) was tested by robust linear regressions with correction for age, sex, height, the first three genotype principal components (PCs),<em> in utero</em> maternal smoking exposure, the first six ReFACTor components, and batch, when appropriate, via limma R package. The results for individuals of the same ethnic subgroup were meta-analyzed using fixed- or random-effects models, based on Cochran's Q p-value. Version 1 is deprecated.</p> <p>The EWAS result files (*.txt) contains:</p> <ul> <li>RSID: CpG name.</li> <li>STUDY: Number of sets of individuals included in the meta-analysis.</li> <li>BETA_meta: Coefficient of the regression.</li> <li>SEBETA_meta: Standard error of the coefficient of the regression.</li> <li>PVALUE_meta: P-value for the association.</li> <li>PVALUE_Q: Cochran's Q p-value.</li> <li>Model: Fixed-effect (FE) or Random-effects (RE2) model.</li> <li>PVALUE_meta_adj: False discovery rate (Benjamini & Hochberg method).</li> </ul>
Figure 4 from: Dunlop J, Penney D (2012) Summary statistics for fossil spider species taxonomy. ZooKeys 192: 1-13. https://doi.org/10.3897/zookeys.192.3093
Figure 4 - Number of fossil spider species per family (as currently assigned).
Multi-trait GWAS of hippocampal subfields (summary statistics)
<p>Summary statistics of the multi-trait GWAS of hippocampal subfields (UK Biobank dataset) performed with <a href="https://github.com/dgarrimar/manta">MANTA</a> (through the <a href="https://github.com/dgarrimar/mvgwas-nf">mvgwas-nf</a> Nextflow pipeline), as described in the publication<i> A fast non-parametric test of association for multiple traits</i> by Garrido-Martín et al. in Genome Biology (<a href="https://doi.org/10.1186/s13059‑023‑03076‑8">https://doi.org/10.1186/s13059‑023‑03076‑8</a>).</p>
U.S. Census Grids (Summary File 1), 1990: Metropolitan Statistical Areas
The U.S. Census Grids (Summary File 1), 1990: Metropolitan Statistical Areas data set contains grids of demographic and socioeconomic data from the year 1990 U.S. census in ASCII andGeoTIFF formats for 39 metropolitan statistical areas with at least one million in population. The grids have a resolution of 7.5 arc-seconds (0.002075 decimal degrees), or approximately 250 square meters. The gridded variables are based on census block geography from Census 1990 TIGER/Line Files and census variables (population, households, and housing variables). This data set is produced by the Columbia University Center for International Earth Science Information Network (CIESIN).
U.S. Census Grids (Summary File 3), 1990: Metropolitan Statistical Areas
The U.S. Census Grids (Summary File 3), 1990: Metropolitan Statistical Areas data set contains grids of demographic and socioeconomic data from the year 1990 U.S. Census in ASCII and GeoTIFF formats for 50 metropolitan statistical areas with at least one million in population. The grids have a resolution of 7.5 arc-seconds (0.002075 decimal degrees), or approximately 250 square meters. The gridded variables are based on census block geography from Census 1990 TIGER/Line Files and census variables (population, households, and housing variables). This data set is produced by the Columbia University Center for International Earth Science Information Network (CIESIN)
U.S. Population Grids (Summary File 1), 2000: Houston Metropolitan Statistical Area, Alpha Version
The U.S. Population Grids (Summary File 1), 2000: Houston Metropolitan Statistical Area, Alpha Version data set contains an ARC/INFO Workspace with grids of demographic data from the 2000 census. The grids have a resolution of 7.5 arc-seconds (0.002075 decimal degrees), or approximately 250 square meters. The gridded variables are based on census block geography from Census 2000 TIGER/Line Files and census variables (population, households, and housing variables) from Summary File 1. This data set is produced by the Columbia University Center for International Earth Science Information Network (CIESIN).
U.S. Census Grids (Summary File 3), 2000: Metropolitan Statistical Areas
The U.S. Census Grids (Summary File 3), 2000: Metropolitan Statistical Areas data set contains grids of demographic and socioeconomic data from the year 2000 U.S. census in ASCII and GeoTIFF formats for 50 metropolitan statistical areas with at least one million in population. The grids have a resolution of 7.5 arc-seconds (0.002075 decimal degrees), or approximately 250 square meters. The gridded variables are based on census block geography from Census 2000 TIGER/Line Files and census variables (population, households, and housing variables). This data set is produced by the Columbia University Center for International Earth Science Information Network (CIESIN).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.