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188
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ShareScore release 0.9.0
Dataset results
188 results for “swine”
Spatial, temporal and molecular dynamics of swine influenza virus-specific CD8 tissue resident memory cells
GEO Series GSE182645. Sus scrofa. 9 samples. Type: Expression profiling by high throughput sequencing.
African swine fever infection epigenetically regulate host membrane protein-encoding genes
GEO Series GSE231435. Sus scrofa. 44 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Real-time MRI monitoring of liquid embolic agent (Onyx) injection in a swine arteriovenous malformation model.
<p><br> </p> <p><strong>Movie 1 Real-time, dynamic EPI-GRE T2 scan of the whole brain volume during Onyx injection. Cine sequence of the ONYX propagation at the level of the pons. Dark liquid embolic agent is gradually filling small arteries around the pons. </strong></p> <p> </p> <p><strong>Movie 2 Real-time dynamic EPI-GRE MRI monitoring of the test infusion of diluted gadolinium (10mM) seen as a short wash-in and wash-out of hypointense signal, confirming the proper position of the microcatheter and verifying the area of trans-catheter perfusion.</strong></p>
A novel lesional transciptional signature separates atherosclerosis with and without diabetes in Yorkshire swine and humans
GEO Series GSE162391. Sus scrofa. 23 samples. Type: Expression profiling by high throughput sequencing.
Transcription map of the Swine Leukocyte Antigen complex and comparative biology of MHCs among vertebrates
GEO Series GSE35828. Sus scrofa. 8 samples. Type: Expression profiling by genome tiling array.
MicroRNA transcriptome profiles during swine muscle development
GEO Series GSE75223. Sus scrofa. 9 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Assessing Environmental Exposure to Viruses in Wastewater Treatment Plant and Swine Farm Scenarios with Next-generation Sequencing and Occupational Risk Approaches
<p>Target enrichment sequencing of aerosol and surface samples collected from wastewater treatment plant (WWTP) and swine farm scenarios. </p>
Culture-independent study on the co-occurrence of L. monocytogenes with other bacterial genera and bacterial diversity on cleaned conveyor surfaces in a swine slaughterhouse
<p><strong>Figure 1. </strong>Violin box plot representation of alpha diversity of bacterial OTUs from meat conveyor surfaces in a cutting facility from a swine slaughterhouse. a) Diversity was measured by Shannon diversity index and Shannon evenness index according to sampling visit, with medians compared using the Kruskall-Walis test. b) Diversity was measured by Shannon diversity index and Shannon evenness index according to <em>Listeria monocytogenes</em> culture status, with medians compared using the Wilcoxon test. Statistical significance: n.s.,<em> p</em>> 0.05; *, <em>p</em><0.05; **, <em>p</em><0.01; ***<em>p</em><0.001.</p> <p><strong>Figure 2</strong>: Non-metric multidimensional scaling (NMDS) of Bray-Curtis and Jaccard distances of bacteria community identified using 16S Miseq sequencing technology on samples isolated from cutting facility conveyor-surfaces according to sampling visit (a and b) and <em>Listeria monocytogenes</em> culture status (c and d). Pairwise PERMANOVA with 999 permutations (using pseudo-F ratios) was used for all comparisons.</p> <p> </p> <p><strong>Figure 3</strong>: Relative frequency of different taxonomic profiles identified from OTUs in cutting-facility conveyor surfaces. a) Relative abundance of the top sixteen genera according to the sampling periods. b) Relative abundance of the top sixteen genera according to <em>L. monocytogenes</em> culture results.</p> <p> </p> <p><strong>Figure 4:</strong> Network construction based on Spearman correlation, Bray-Curtis dissimilarities, andKulback-Leibler dissimilarities. a) General network of all associations between genera clustered according to constant Potts model (communities sharing most links between each other). The size of each node refers to the abundance of the genus, the thickness of the link refers to its weight (presented here by the Spearman correlation coefficient), and the color of each node refers to the community (nodes with the same color belong to the same community). b) Network construction based on the direct associations between <em>Listeri</em>a genus and the other genera and indirect associations between those genera and others. Links colored in red represent negative associations between the genera while green links represent positive associations. The node labelled “none” refers to the unidentified genus from the Elusimicrobia phylum.</p> <p><strong>Supplementary material</strong></p> <p><strong>Supplementary Table 1: </strong>Sample identification with number of sequences, OTUs, <em>Listeria monocytogenes</em> culture-base status and Shannon measure and its evenness.</p> <p><strong>Supplementary Table 2: </strong>Total number of nodes and links resulting from the network construction based on the Spearman correlation, Bray-Curtis, and Kullback-leibler dissimilarities.</p> <p><strong>Supplementary Figure S1:</strong> Rarefaction curve of OTUs for each sample collected from meat conveyor surfaces.</p> <p><strong>Supplementary Figure S2:</strong> Relative frequency of bacterial species identified from OTUs detected in cutting-facility conveyor surfaces according to positive samples to <em>Listeria monocytogenes </em>culture-based method.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.