Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
1,007
datasets available to search
ShareScore release 0.9.0
Dataset results
1,007 results for “three dimensional”
Transition from Light Diffusion to Localization in Three-Dimensional Amorphous Dielectric Networks near the Band Edge
<p>Data files and codes to generate all data considered in "Transition from Light Diffusion to Localization in Three-Dimensional Amorphous Dielectric Networks near the Band Edge", J. Haberko, L.S. Froufe-Perez, and F. Scheffold, Nature Communications 2020. DOI: 10.1038/s41467-020-18571-w</p>
Renormalisation of the energy-momentum tensor in three-dimensional scalar SU(N) theories using the Wilson flow -- data release
<p>This repository contains the lattice two-point function measurements required to reproduce the results of the paper "Renormalisation of the energy-momentum tensor in three-dimensional scalar SU(N) theories using the Wilson flow" (<a href="https://arxiv.org/abs/2009.14767">https://arxiv.org/abs/2009.14767</a>).</p> <p>The code required to perform the data analysis can be found in <a href="https://github.com/josephleekl/scalar_emt_analysis">https://github.com/josephleekl/scalar_emt_analysis</a>.</p> <p>For any questions please get in touch: joseph.lee@ed.ac.uk </p>
Effects of three-dimensional soil heterogeneity and species composition on plant biomass and biomass allocation of grass-mixtures
<p>Soil heterogeneity significantly affects plant dynamics such as plant growth and biomass. Most studies developed soil heterogeneity in two dimensions, i.e. either horizontally or vertically. However, soil heterogeneity in natural ecosystems varies both horizontally and vertically i.e. in three dimensions. Previous studies on plant biomass and biomass allocation rarely considered the joint effects of soil heterogeneity and species composition. Thus, to investigate such joint effects on plant biomass and biomass allocation, a controlled experiment was conducted, where three levels of soil heterogeneity and seven types of species compositions were applied. Such soil heterogeneity was developed by filling nutrient-rich and nutrient-poor substrates in an alternative pattern in pots with different patch sizes (small, medium or large), and species compositions was achieved by applying three plant species (i.e. Festuca elata, Bromus inermis, Elymus breviaristatus) in all possible combinations (growing either in monoculture or in mixtures). Results showed that patch size significantly impacted plant biomass and biomass allocation, which differed among plant species. Specially, at the pot scale, with increasing patch size, shoot biomass decreased, while root biomass and R: S ratio increased, and total biomass tended to show a unimodal pattern, where the medium patch supported higher total biomass. Moreover, at the substrate scale, more shoot biomass and total biomass were found in nutrient-rich substrate. Furthermore, at the community scale, two of the three target plant species growing in monoculture had more shoot biomass than those growing together with other species. Thus, our results indicate soil heterogeneity significantly affected plant biomass and biomass allocation, which differ among plant species, though more research is needed on the generalization on biomass allocation. We propose that soil heterogeneity should be considered more explicitly in studies with more species in long-term experiments.</p>
TVD differencing on three-dimensional unstructured meshes with monotonicity-preserving correction of mesh skewness (Accompanying data)
<p>This data set contains the data accompanying the article F. Denner and B. van Wachem, TVD differencing on three-dimensional unstructured meshes with monotonicity-preserving correction of mesh skewness, Journal of Computational Physics (2015), http://dx.doi.org/10.1016/j.jcp.2015.06.008.</p>
Supplementary video content for "Three-dimensional visualization of ensemble weather forecasts", Parts 1 and 2 (Geoscientific Model Development, 2015)
<p>Supplementary video content (full resolution) for the papers "Three-dimensional visualization of ensemble weather forecasts - Part 1: The visualization tool Met.3D (version 1.0)" and "Three-dimensional visualization of ensemble weather forecasts - Part 2: Forecasting warm conveyor belt situations for aircraft-based field campaigns", Geoscientific Model Development, 2015. The corresponding papers can be found on http://geosci-model-dev.net/.</p>
Combined three-dimensional Milky Way extinction map
<p>This file contains the combined Milky-Way extinction map from Bovy, Rix, Green et al. (2015) (see the Appendix) in HDF5 format. The format is similar to that described here: http://argonaut.skymaps.info/usage, except that no samples are included (so only the /best_fit attribute and other supporting ones are included). This file is downloaded and read by the https://github.com/jobovy/mwdust code.</p>
Dorsalistachya quadrisegmentorum - Dataset 1 – Three-dimensional reconstruction model (SPIERSView and VAXML format)
<p>Three-dimensional reconstruction model of <em>Dorsalistachya quadrisegmentorum</em> in SPIERSView and VAXML format.</p> <p>Notes:</p> <ol> <li>SPIERSView file (.SPV) models can conveniently be viewed using the SPIERSView software, freely available in both Windows and Mac versions from http://www.spiers‐software.org. However, note that low-performance computers may not possess a sufficiently powerful graphics card to render and rotate the model.</li> <li>VAXML file format models are saved as a ZIP-compressed VAXML datasets. VAXML uses one or more .STL files to define the geometry of objects that comprise the dataset, together with one .VAXML file that provides metadata on the dataset as a whole, and specifies how the .STL files should be put together. We recommend using the free SPIERS software to view this model format (http://spiers-software.org/). However, .STL files can be opened independently in several freely available software programs (e.g. MeshLab, Blender). Additional information on the VAXML format can be found here: http://spiers-software.org/VAXML.htm.</li> </ol>
Dorsalistachya quadrisegmentorum - Video 1 - Three-dimensional reconstruction model (AVI and MOV format)
<p>Three-dimensional reconstruction of the structure and organization of <em>Dorsalistachya quadrisegmentorum</em> rendered with Blender. Available in .AVI (Audio Video Interleaved) and .MOV (Apple Quicktime) format.</p>
Three-dimensional arrangement of human bone marrow microvessels revealed by immunohistology in undecalcified sections - final volumes
<p>These are the registered and filtered volumes used to generate the meshes that we then show in videos.</p>
Data presented in "Three-dimensional Doppler, polarization-gradient, and magneto-optical forces for atoms and molecules with dark states"
<p>These are the data presented in our paper "Three-dimensional Doppler, polarization-gradient, and magneto-optical forces for atoms and molecules with dark states" which has been accepted for publication in the New Journal of Physics (as of 07 November 2016).</p>
Teleseismic reverse time migration image dataset of southwest Japan in "Three-dimensional teleseismic elastic reverse-time migration with deconvolution imaging condition and its application to southwest Japan"
<p>This dataset contains the teleseismic elastic reverse time migration results of southwest Japan used in the manuscript entitled "Three-dimensional teleseismic elastic reverse-time migration with deconvolution imaging condition and its application to southwest Japan". submitted to Journal of Geophysical Research Letters.</p>
Data underpinning "Quantitative functional renormalization for three-dimensional quantum Heisenberg models"
<p>Data and script for creation of the plots.</p> <p>To install the software environment start julia in the directory of the files, type `] activate .` then `instantiate`</p>
The three-dimensionally articulated oral apparatus of a Devonian heterostracan sheds light on feeding in Palaeozoic jawless fishes
<p>Attempts to explain the origin and diversification of vertebrates have commonly invoked the evolution of feeding ecology, contrasting the passive suspension feeding of invertebrate chordates and larval lampreys with active predation in living jawed vertebrates. Of the extinct jawless vertebrates that phylogenetically intercalate these living groups, the feeding apparatus is well-preserved only in the early diverging stem-gnathostome heterostracans. However its anatomy remains poorly understood. Here we use X-ray microtomography to characterise the feeding apparatus of the pteraspid heterostracan <em>Rhinopteraspis dunensis </em>(Roemer, 1855). The apparatus is composed of thirteen plates arranged approximately bilaterally, most of which articulate from the postoral plate. Our reconstruction shows that the oral plates were capable of rotating around the transverse axis, but likely with limited movement. It also suggests the nasohypophyseal organs opened internally, into the pharynx. The functional morphology of the apparatus in <em>Rhinopteraspis </em>precludes all proposed interpretations of feeding except for suspension/deposit feeding and we interpret the apparatus as having served primarily to moderate the oral gape. This is consistent with evidence that at least some early jawless gnathostomes were suspension feeders and runs contrary to macroecological scenarios that envisage early vertebrate evolution as characterised by a directional trend towards increasingly active food acquisition.</p>
Gate-Compatible Circuit QED in a Three-Dimensional Cavity Architecture
<p>This repository contains the raw data and processing code of the paper "Gate-Compatible Circuit QED in a Three-Dimensional Cavity Architecture"</p>
Data and code for "Niobium Quantum Interference Microwave Circuits with Monolithic Three-Dimensional (3D) Nanobridge Junctions"
<p>Data and measurements scripts for the paper "Niobium Quantum Interference Microwave Circuits with Monolithic Three-Dimensional (3D) Nanobridge Junctions"</p> <p>The package "stuelab" used in the scripts is also included. <br><br>Funding by the Deutsche Forschungsgemeinschaft (DFG) via Grants No. BO 6068/1-1, No. BO 6068/2-1, and No. KO 1303/13-2, and support from the COST actions NANOCOHYBRI (CA16218) and SUPERQUMAP (CA21144)</p>
Presentation in HEARING: High-resolution structural and functional EAR imaging 2023: Three-dimensional vibration of the human tympanic membrane using a scanning laser doppler vibrometer
<p>This is for Bastian Baselt's poster presentation in HEARING: High-resolution structural and functional EAR imaging, Ascona, Switzerland in 2023, and the related data.</p>
Three-dimensional Unfolding and Unfaulting Dataset for Structural Interpretation Using Self-Supervised Learning
<p>This dataset accompanies the study "Three-dimensional unfolding and unfaulting for structural interpretation using self-supervised learning." It provides synthetic data used to develop and validate a novel 3-D lightweight neural network framework for restoring deformed geological structures to their flattened state. The data include highly deformed examples with complex faulting and folding, designed to test the model's ability to compute precise shifts that realign stratigraphic layers. </p>
Three-dimensional crustal channel flows beneath the southeastern Tibetan Plateau revealed by full-waveform ambient noise tomography
<p>This is a new version of Vp and Vs models for paper titled "Three‐Dimensional Crustal Channel Flows Beneath the Southeastern Tibetan Plateau Revealed by Full‐Waveform Ambient Noise Tomography" published in Geophysical Research Letters.</p> <p>Modification history: new Vs model includes from surface downward to 120 km depth.</p> <p>Please ignore the models in version 1 and 2.</p>
Single-Shot Three-Dimensional Orientation Imaging of Nanorods Using Spin to Orbital Angular Momentum Conversion_experimental_dataset
<p>This is the datafile containing the raw experimental data to the article Fordey et al., Single-Shot Three-Dimensional Orientation Imaging of Nanorods Using Spin to Orbital Angular Momentum Conversion, <em>Nano Lett.</em> 2021, 21, 17, 7244–7251. </p>
Data from: Human face-off: a new method for mapping evolutionary rates on three-dimensional digital models
<p>Modern phylogenetic comparative methods allow estimating evolutionary rates of phenotypic change, how these rates differ across clades, and assessing whether the rate remained constant over time. Unfortunately, currently available phylogenetic comparative tools express the rate in terms of a scalar dimension, hence they do not allow us to determine rate variations among different parts of a single, complex phenotype, or charting of realized rate variation directly onto the phenotype. Herein, we present a new method which allows the mapping of evolutionary rate variation directly on three-dimensional phenotypes, informing on the direction and magnitude of trait change automatically.</p> <p>This new method, implemented by the function rate.map embedded in the R package 'RRphylo', is based on phylogenetic ridge regression rate estimates. Since the latter represent ridge regression slopes, they possess sign and magnitude. In 'RRphylo', different rates are calculated for different districts of the phenotype, which can then be visualized directly onto the phenotype itself. We present the application of rate.map to the evolution of facial skeleton in Hominoidea (the clade including living and fossil apes), the primate clade inclusive of Homo and the greater apes. We found that the highly derived, unique shape of the face in modern humans evolved through rapid phenotypic changes affecting the nasal bones, the brow ridge and the maxillary region. The canine fossa, a facial feature unique to Homo sapiens, did not belong to a region of rapid phenotypic change, and could be seen as the by-product of midface evolution as suggested by previous studies.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.