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FIGURE 5. Vertical shafts with terminal chambers. 1 in Neoichnology of the eastern spadefoot toad, Scaphiopus holbrookii (Anura: Scaphiopodidae): criteria for recognizing anuran burrows in the fossil record
FIGURE 5. Vertical shafts with terminal chambers. 1, Side view (SH25). 2, Frontal view (SH33). 3, Side view (SH33).
FIGURE 1 in Larval fish assemblages in nearshore waters of southeast Gulf of California: vertical and temporal patterns
FIGURE 1 | A. Map of the study area, nearshore waters in front of the Huizache-Caimanero estuarine system, located in the southeast Gulf of California, Sinaloa, Mexico. Sampling sites are indicated by black circles. B. Detail of the study area and sampling sites located in front of the Presidio River inlet.
FIGURE 4 in Larval fish assemblages in nearshore waters of southeast Gulf of California: vertical and temporal patterns
FIGURE 4 | Boxplots for diversity and evenness for the sampled months from September 1994 to June 1995. A. Diversity, B. Evennes. Line: median; box: 25th to 75th percentiles; whiskers: minimum to maximum value range. Differences in GLM p-values are shown by lowercase letters, different letters mean significant differences for the indexes (p-value <0.05).
FIGURE 7 in Larval fish assemblages in nearshore waters of southeast Gulf of California: vertical and temporal patterns
FIGURE 7 | Vertical distribution of the abundance of the species found in the study. Bars indicate the mean value (individuals m-3) and error bars the Standard Error.
FIGURE 3 in Larval fish assemblages in nearshore waters of southeast Gulf of California: vertical and temporal patterns
FIGURE 3 | Water temperature and salinity profiles at each sampling site, for each sampled month from September 1994 to June 1995.
FIGURE 5 in Larval fish assemblages in nearshore waters of southeast Gulf of California: vertical and temporal patterns
FIGURE 5 | Correlation triplot of the db-RDA showing the relationship between explanatory (temperature and salinity) and response variables (species). Black labels indicate the position of species in the ordination; their size increase according to the abundance of the species to achieve a better visualization. Samples are coded by depths and months. The angles between species and explanatory variables reflect their correlations; a small angle implies a positive correlation, a large one suggests a negative correlation, and a 90° angle indicates no correlation between two variables.
FIGURE 2 in Larval fish assemblages in nearshore waters of southeast Gulf of California: vertical and temporal patterns
FIGURE 2 | A. Box plots showing temporal variations in temperature and salinity during the sampling period (1994–1995). Line: median; box: 25th to 75th percentiles; whiskers: minimum to maximum value range. Months with the same letters do not significantly differ using Dunn's test. B. Monthly variability of salinity from October 2011 to August 2014, dots indicate the mean value and error bars the Standard Deviation.
FIGURE 6 in Larval fish assemblages in nearshore waters of southeast Gulf of California: vertical and temporal patterns
FIGURE 6 | Temporal and vertical variations of the abundance of the most abundant species found in the study. Dots indicate the mean value and error bars the Standard Error. SEP: September, DEC: December, Apr: April, JUN: June.
Ultrafast photoresponse of vertically oriented TMD films probed in a vertical electrode configuration on Si chips
<p>This dataset contains the measurement data for figures published in the journal article: </p> <p> Ultrafast photoresponse of vertically oriented TMD films probed in a vertical electrode configuration on Si chips (https://doi.org/10.1039/D2NA00313A)</p> <p>by Topias Järvinen, Seyed-Hossein Hosseini Shokouh, Sami Sainio, Olli Pitkänen and Krisztian Kordas</p>
Fig. 2 in Vertically stratified arthropod diversity in a Florida upland hardwood forest
Fig. 2. Polynomial (b = −2.21, 0.11; R2 = 0.93; F = 76.17; P <0.0001) regressions 2, 9 of trap height and mean species richness for arthropods collected in an upland hardwood forest in Florida, USA. Species richness declines with vertical height.
Fig. 3 in Vertically stratified arthropod diversity in a Florida upland hardwood forest
Fig. 3. Mean morphospecies richness categorized by order across 2 m height classes in an upland hardwood hammock in Florida, USA.
Fig. 4 in Vertically stratified arthropod diversity in a Florida upland hardwood forest
Fig. 4. Rarefaction curves for size height classes of arboreal and ground pitfall traps collecting arthropods in an upland hardwood forest in Florida, USA. Steep curves indicate that further sampling would reveal additional morphospecies.
Fig. 1 in Vertically stratified arthropod diversity in a Florida upland hardwood forest
Fig. 1. Arboreal pitfall tap design. Two sheets of metal flashing are cut to length and punched with holes. Next, a cylinder and funnel are formed and secured with pop rivets or similar fastener. A plastic bag is inserted into the cylinder, and the cylinder and funnel are attached with tie straps. The bag is then filled with about 100 mL of 98% propylene glycol and secured to a tree trunk of branch such that arthropods slide down the funnel and into the collection fluid.
Fig. 2 a in Circulating dengue virus serotypes and vertical transmission in AEdES larvae during outbreak and inter-outbreak seasons in a high dengue risk area of Sri Lanka
Fig. 2 a Distribution of dengue cases in the Kegalle District and Mawanella MOH area, Sri Lanka from December 2015 to March 2017. b Distribution of DENV serotypes in patients and distribution of Aedes mosquito larvae in and around the residences of dengue patients in Mawanella from December 2015 to March 2017. Abbreviations: DENV1, -2, -3, -4, DENV serotypes 1, 2, 3, 4
Datasets and scripts for: Single-Molecule Dynamic Structural Biology with Vertically Arranged DNA on a Fluorescence Microscope
<p>The folder contains raw datasets (.ptu files) together with scripts and relevant results to reproduce the figures' plots of: "Single-Molecule Dynamic Structural Biology with Vertically Arranged DNA on a Fluorescence Microscope". </p>
Dataset of "Transient current responses of organic electrochemical transistors by vertical ionic diffusion and electrolyte resistance"
<p>This dataset supports the article </p> <p>"<span>Transient current responses of organic electrochemical transistors by vertical ionic diffusion and electrolyte resistance</span>"</p> <p> </p> <p>Raw data for the article "<span>Transient current responses of organic electrochemical transistors by vertical ionic diffusion and electrolyte resistance</span>". For further details see the readme.txt file.</p>
KARI drone vertical takeoff and landing navigation dataset
<p>Dataset for testing visual-inertial navigation under constant velocity, and obstacle detection with LiDAR.</p> <p>Data was collected in the field by a custom-built hexacopter mounting the following sensors.<br>Rostopics are given in parentheses:</p> <ul> <li>Nadir-pointing RealSense d455 payload (visual-inertial odometry): 10 Hz RGB camera frames (/camera/color/image_raw), 200 Hz IMU data (/camera/imu)</li> <li>RTK GNSS (groundtruth): position, velocity, attitude quaternions (/mavros/global_position/local)</li> <li>Nadir-pointing Livox Avia scanning LiDAR payload (safe landing site detection, only available during landing): pointcloud (/livox/lidar)</li> <li>Nadir-pointing doppler radar altimeter: altitude (/sensor_data)</li> </ul> <p><a href="https://github.com/dirkpitt2050/open_vins">https://github.com/dirkpitt2050/open_vins</a> contains an example config, kari_vtol, that shows how to use the dataset.</p>
Data from Diel Studies of the vertical migration of Margalefidinium polykrikoides in a lower Chesapeake Bay tributary.
<p>This dataset is in support of the publication "Diel vertical migration rates of the harmful algal bloom dinoflagellate species <em>Margalefidinium polykrikoides</em> in a lower Chesapeake Bay tributary." published in Frontiers in Aquatic Microbiology. The paper provides field-derived estimates of <em>M. polykrikoides’</em> diel vertical migration (DVM) rates have been made in the Chesapeake Bay. In this study, we conducted four targeted field experiments to investigate the DVM of M. polykrikoides in the Lafayette River, a sub-tributary of the Chesapeake Bay. Vertical profiles of chlorophyll a fluorescence collected at least every 2 h over diel periods were used to track the DVM of M. polykrikoides during blooms. Here we provide two supporting data files: 1) vertical profile data collected during the diel studies; and 2) cell counts for vertically migrating dinoflagellate species present during the first three diel studies.</p>
Data for "Temporal and vertical variability in phytoplankton primary production and microbial community respiration in the North Pacific Subtropical Gyre"
<p>This ALOHA_GOP&R.xslx data set provides measurements of biological rates conducted between April 2015 and July 2020 at different depths in the euphotic zone at or in the vicinity of Station ALOHA (22° 45' N, 158° W), the long-term sampling site of the Hawaii Ocean Time-series (HOT) program, within the North Pacific Subtropical Gyre. </p> <p>The file ALOHA_GOP&R.xslx contains incubation-based measurements of gross oxygen production and community respiration that were measured in the same incubation bottles by applying the <sup>18</sup>O-water method and tracking net changes in oxygen to argon ratios during dawn to dusk in situ incubations, following Ferrón et al. (2016). The samples were measured using membrane inlet mass spectrometry. Rates were measured at 6 depths within the euphotic zone: 5, 25, 45, 75, 100, 125 m, except in a few occasions in which there were no measurements made at 125 m.</p> <p>Data description</p> <table> <tbody> <tr> <td> <p>Variable</p> </td> <td> <p>Description</p> </td> <td> <p>Units</p> </td> </tr> <tr> <td> <p>Date </p> </td> <td> <p>Date of sampling and start of incubation (UTC -10 hours)</p> </td> <td> <p> </p> </td> </tr> <tr> <td> <p>Cruise ID</p> </td> <td> <p>Cruise identification</p> </td> <td> <p>#</p> </td> </tr> <tr> <td> <p>Latitude</p> </td> <td> <p>Latitude</p> </td> <td> <p>degrees N</p> </td> </tr> <tr> <td> <p>Longitude</p> </td> <td> <p>Longitude</p> </td> <td> <p>degrees E</p> </td> </tr> <tr> <td>Stn ALOHA </td> <td>Whether the data are from Station ALOHA (yes/no)</td> <td> </td> </tr> <tr> <td>IncT</td> <td> <p>Incubation time</p> </td> <td> <p>hours</p> </td> </tr> <tr> <td> <p>Depth</p> </td> <td>Nominal depth of sampling and incubation </td> <td> <p>meters</p> </td> </tr> <tr> <td>GOP</td> <td>Gross oxygen production </td> <td>mmol O<sub>2</sub> m<sup>-3</sup> d<sup>-1</sup></td> </tr> <tr> <td>CR</td> <td>Estimate of community respiration </td> <td>mmol O<sub>2</sub> m<sup>-3</sup> d<sup>-1</sup></td> </tr> <tr> <td> <p>Flag GOP</p> </td> <td>Flag identification for gross oxygen production (good=1,questionable=2)</td> <td> <p>#</p> </td> </tr> <tr> <td> <p>Flag CR</p> </td> <td> <p>Flag identification for community respiration (good=1,questionable=2)</p> </td> <td> <p>#</p> </td> </tr> </tbody> </table> <p> </p> <p>The Light-dark_ALOHA_rates.xlsx file contains metabolic rates measured by the ligth-dark oxygen method between June 2005 and June 2007 at different depths in the euphotic zone at Station ALOHA (22° 45' N, 158° W). Rates of net community production, communnity respiration, and gross oxygen production were measured at 6 depths within the euphotic zone (5, 25, 45, 75, 100, 125 m) in dawn to dawn incubations, following Williams et al. (2004). </p> <p>Data description</p> <table> <tbody> <tr> <td> <p>Variable</p> </td> <td> <p>Description</p> </td> <td> <p>Units</p> </td> </tr> <tr> <td> <p>HOT</p> </td> <td>HOT cruise number</td> <td> <p>#</p> </td> </tr> <tr> <td> <p>Date</p> </td> <td>Date of sampling and start of incubation (UTC -10)</td> <td> <p> </p> </td> </tr> <tr> <td> <p>Depth</p> </td> <td>Nominal depth of sampling and incubation </td> <td> <p>meters</p> </td> </tr> <tr> <td>GOP</td> <td>Gross oxygen production, average of 8 replicates</td> <td>mmol O<sub>2</sub> m<sup>-3</sup> d<sup>-1</sup></td> </tr> <tr> <td>GOP SE</td> <td>Gross oxygen production standard error </td> <td>mmol O<sub>2</sub> m<sup>-3</sup> d<sup>-1</sup></td> </tr> <tr> <td>CR</td> <td> <p>Dark community respiration, average of 8 replicates</p> </td> <td> <p>mmol O<sub>2</sub> m<sup>-3</sup> d<sup>-1</sup></p> </td> </tr> <tr> <td> <p>CR SE</p> </td> <td>Dark community respiration standard error</td> <td> <p>meters</p> </td> </tr> <tr> <td>NCP</td> <td>Net community production,average of 8 replicates </td> <td>mmol O<sub>2</sub> m<sup>-3</sup> d<sup>-1</sup></td> </tr> <tr> <td>NCP SE</td> <td>Net community production standard error </td> <td>mmol O<sub>2</sub> m<sup>-3</sup> d<sup>-1</sup></td> </tr> </tbody> </table> <p> </p>
Vertically pointing doppler radar profiles (24 GHz Metek MRR-2) at Concordia Station (Dome C, Antarctica), aggregated to 5min, monthly netCDF archive
<p>Vertical profiles along the first three kilometres of atmosphere above the ground (from 300 to 3000 m AGL) of equivalent radar reflectivity factor (Ze), Doppler velocity (W) and Doppler spectral width (Sw) from a 24-GHz vertically pointing Micro Rain Radar MRR-2 by METEK GmbH positioned at Concordia Station (Dome C, Antarctica).</p> <p>Metadata available at <a href="https://antarcticdatacenter.cnr.it/geonetwork/srv/eng/catalog.search#/metadata/6dc25ff0-4c03-4ca8-af0d-cba06a411dc2" target="_blank" rel="noopener">https://antarcticdatacenter.cnr.it/geonetwork/srv/eng/catalog.search#/metadata/6dc25ff0-4c03-4ca8-af0d-cba06a411dc2</a> </p> <p>--------------------------------------------------------------------</p> <p>Example of netCDF file structure:</p> <h2><strong>File "DMC_MRR_MeK_201901_5min.nc"</strong></h2> <pre><strong> dimensions</strong>: <em>range </em>= 31; <em>time </em>= UNLIMITED; // (7736 currently) <strong>variables</strong>: float <em>Ze</em>(range=31, time=7736); :description = "Equivalent reflectivity factor relative to the most significant peak, dealiased, 5min non-logarithmic average. NaN means clear sky at the specified height."; :units = "dBZ"; :_ChunkSizes = 31U, 1U; // uint long <em>time_UTC(time=7736);</em> :description = "Measurement time. Timestamp indicates the end of the aggregation interval, e.g. 01-Mar-2020 00:05:00 represents the average of the variables between 01-Mar-2020 00:00:01 and 01-Mar-2020 00:05:00."; :time_zone = "UTC"; :units = "Seconds since 1970-01-01 00:00:00 (Unix time)."; :_ChunkSizes = 512U; // uint float <em>W</em>(range=31, time=7736); :description = "Mean Doppler Velocity of the most significant peak, dealiased, 5min average. Value not available in clear-sky conditions."; :units = "m s^-1"; :_ChunkSizes = 31U, 1U; // uint float <em>height</em>(range=31, time=7736); :description = "Height above instrument."; :units = "m"; :_ChunkSizes = 31U, 1U; // uint float <em>spectralWidth</em>(range=31, time=7736); :description = "Doppler Spectral Width of the most significant peak, dealiased, 5min average. Value not available in clear-sky conditions."; :units = "m s^-1"; :_ChunkSizes = 31U, 1U; // uint // <strong>global attributes</strong>: :<em>title </em>= "Micro rain radar data processed with IMProToo (Maahn, M. and Kollias, P., 2012), aggregated to 5min, monthly netCDF archive."; :<em>comment </em>= "IMProToo has been developed for improved snow measurements. Note that this data has been processed regardless of precipitation type."; :<em>time_label </em>= "Jan 2019"; :<em>source </em>= "Micro Rain Radar 2 (MRR-2), METEK GmbH, at DMC (Antarctica), frequency: 24 GHz, power: 50 mW, antenna diameter: 60 cm [https://metek.de/product/mrr-2/]"; :<em>institution </em>= "CNR-INO, Florence (IT)"; :<em>contact_person </em>= "Gianluca Di Natale, CNR-INO, Florence (IT), gianluca.dinatale@ino.cnr.it"; :<em>location </em>= "Concordia Station (Dome C, Antarctica, 75°06\'S, 123°21\'E, 3233 m a.s.l.)"; :<em>author </em>= "Giacomo Roversi, Ca\' Foscari University, Venice (IT) and CNR-ISAC, Rome (IT), g.roversi@isac.cnr.it"; :<em>creation_date </em>= "22-Oct-2024 17:32:24 UTC"; :<em>coverage </em>= "Monthly coverage (Jan 2019): 90.3226 %"; :<em>time_resolution </em>= "5 minutes"; :<em>history </em>= "Created with IMProToo v0.107 [https://github.com/maahn/IMProToo], aggregated to 5 minutes temporal resolution with an average of the 1-minute values if least 3 out of 5 are not NaN."; </pre>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.