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Figure 3 in Lasalleistichus a new genus of Tetrastichinae (Hymenoptera: Eulophidae) from the Neotropical regionı including four new species
Figure 3. (a) Palmistichus ixtlilxochitli, ♀ nontype habitus lateral. (b) Agmostigma frontale, ♀ holotype habitus lateral. (c) Lasalleistichus albiclava, ♂ paratype head lateral. (d) L. longicaulis, ♀ holotype habitus dorsal. Scales: (a–b, d) 1 mm; (c) 0.5 mm.
Figure 1 in Noyesaphytis (Chalcidoidea: Aphelinidae) - an unusual new genus from Madagascar, and a reassessment of Aphelininae classification based on morphology
Figure 1. Noyesaphytis lasallei holotype female; 1. Dorsal habitus, critical-point-dried, card-mount.
The dataset of figures for "The GPU version of LICOM3 under HIP framework and its large-scale application" (updated)
<p>A high-resolution (1/20°) global ocean general circulation model with Graphics processing units (GPUs) code implementations is developed based on the LASG/IAP Climate system Ocean Model version 3 (LICOM3) under Heterogeneous-compute Interface for Portability (HIP) framework. The dynamic core and physics package of LICOM3 are both ported to the GPU, and 3-dimensional parallelization is applied. The HIP version of the LICOM3 (LICOM3-HIP) is 42 times faster than what the same number of CPU cores dose, when 384 AMD GPUs and CPU cores are used. The LICOM3-HIP has excellent scalability; it can still obtain speedup of more than four on 9216 GPUs comparing to 384 GPUs. In this phase, we successfully performed a test of 1/20° LICOM3-HIP using 6550 nodes and 26200 GPUs, and at the grand scale, the model’s time to solution can still obtain an increasing, about 2.72 simulated years per day (SYPD). The high performance was due to putting almost all of computation processes inside GPUs, and thus greatly reduces the time cost of data transfer between CPUs and GPUs. At the same time, a 14-year spin-up integration following the phase 2 of Ocean Model Intercomparison Project (OMIP-2) protocol of surface forcing has been conducted, and the preliminary results have been evaluated. We found that the model results have little differences from the CPU version. Further comparison with observations and lower-resolution LICOM3 results suggests that the 1/20° LICOM3-HIP can not only reproduce the observations, but also produce much smaller scale activities, such as submesoscale eddies and frontal scales structures.</p>
Supplementary files for Crane et al., "On a wing and a prayer": R Code, data and figures
<p>Datasets, R code and figures pertaining to the manuscript: Crane M, Silva I, Grainger MJ, & Gale GA.<em> On a wing and a prayer: limitations and gaps in global bat wing morphology trait data</em></p>
Supplementary Figure S7 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Supplementary Figure S7 Infant Trachypithecus popa sp. nov. with creamy white fur coloration at Popa Mountain Park, Myanmar (Photo: Thaung Win).
Supplementary Figure S5 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Supplementary Figure S5 Dorsal (A), lateral (B), and ventral (C) view of skull and mandible of holotype (NHMUK ZD.1914.7.19.3) of Trachypithecus popa sp. nov. (Photo: Courtesy of the Trustees of the Natural History Museum, London).
Supplementary Figure S6 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Supplementary Figure S6 Ventral view of skull without mandible (A), and dorsal (B), lateral (C), and ventral (D) views of mandible of holotype (NHMUK ZD.1914.7.19.3) of Trachypithecus popa sp. nov. (Photo: Courtesy of the Trustees of the Natural History Museum, London).
Figure 6 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Figure 6 Photos of Trachypithecus phayrei (A, B), Trachypithecus popa sp. nov. (C, D) and Trachypithecus melamera (formerly T. p. shanicus) (E, F) A: Adult female T. phayrei at Yangon Zoo, Myanmar (photo by Tilo Nadler); B: Adult male T. phayrei from Lawachara National Park, Bangladesh (photo by Tanvir Ahmed); C, D: Subadult male T. popa from Mount Popa, Myanmar (photo by Lay Win); E: Adult female T. melamera at Mandalay Zoo, Myanmar (photo by Tilo Nadler), F: Adult female T. melamera with offspring from Gaoligong Mountains National Park, China (photo by Chi Ma).
Supplementary Figure S1 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Supplementary Figure S1 Ultrametric tree showing phylogenetic relationships and divergence times among all investigated taxa inferred from BEAST analysis (node bars indicate 95% HPDs and node supports of <100% ML BS and <1.0 BI PP are given at respective nodes).
Figure 5 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Figure 5 Geographical distribution of mitochondrial clades found in Trachypithecus phayrei Sample locations are numbered as in Figures 1, 2 (see also Supplementary Table S1) and colored according to their mitochondrial clade assignment. Limits of the Central clade to the northeast and East clade to the southwest, depicted in light green, are not yet firmly resolved. Samples from locations 6–9 form Central clade A, while those from locations 10–12 cluster in Central clade B. Note, at location 10, haplotypes of the Central and East clades were found. Museum specimen from location 13 cluster unexpectedly with Central clade A (see Results).
Supplementary Figure S3 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Supplementary Figure S3 Morphometric comparisons (PCA performed on 12 molar measurements (A-B, same analysis as in Figure 4), 24 molar and cranial measurements (C-D), and 12 cranial measurements (E-F)) among Trachypithecus phayrei individuals representing West (red), Central (blue), and East (yellow) clades. Shown is projection of specimen scores on first and second principal components extracted with percentage of variance explained by each component (Tables S7-8). Specimens are clustered by species and represented by maturity (right panels) and sex (left panels) to show the influence of age and sex on comparisons.
Supplementary Figure S4 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Supplementary Figure S4 Dorsal (A), lateral (B), and ventral (C) view of stuffed holotype (NHMUK ZD.1914.7.19.3) of Trachypithecus popa sp. nov. (Photo: Courtesy of the Trustees of the Natural History Museum, London).
Figure 3 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Figure 3 Head-body length (A), tail length (B), and tail/head-body length ratio (C) of adult male and female Trachypithecus phayrei representing West, Central, and East clades (median, quartiles, min-max) Numbers in brackets: sample sizes; post-hoc pair-wise population comparisons of traits; Mann-Whitney U-test, with Bonferroni correction for multiple testing: *: P<0.025, (*): P<0.05; see Supplementary Table S6.
Supplementary Figure S2 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Supplementary Figure S2 Morphometric comparisons (PCA performed on 12 molar measurements) among Trachypithecus phayrei individuals representing West (red), Central (blue), and East (yellow) clades. Shown is projection of specimen scores on first and second versus third (A and B, respectively) principal components extracted (Supplementary Table S7).
Figure 4 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Figure 4 Morphometric comparisons (principal component analysis performed on 12 molar measurements) among Trachypithecus phayrei individuals representing West (red), Central (blue), and East (yellow) clades Shown is projection of specimen scores of first and second principal components, with variance explained by each component (graphical depictions of third principal component appear in Supplementary Figure S2 and underlying statistics are provided in Supplementary Table S7.)
Figure 2 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Figure 2 Mitogenomic tree showing phylogenetic relationships and divergence times among mitochondrial lineages of Trachypithecus (A) and detailed view on T. phayrei (B) Node bars indicate 95% highest posterior densities (HPDs). Node supports of <100% ML BS and <1.0 BI PP are given at respective nodes. In A, species group assignment is given on the right; *: T. crepusculus, a member of the T. obscurus group according to phenotype and nuclear sequence data. In B, sample labels contain individual ID and sample location number (as in Figures 1, 5, Supplementary Table S1). Clade assignment is given on the right. Complete ultrametric tree including all non-Trachypithecus taxa and details on estimated divergence times are provided in Supplementary Figure S1 and Table S4, respectively.
Figure 1 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species
Figure 1 Distribution of Trachypithecus phayrei according to IUCN Red List (Bleisch et al., 2020) Numbers indicate sample locations for genetic analysis: 1: Letsegan, 2: Kin, 3: Dudaw-Taung, 4: Ramree Island, 5: near Mount Arakan, 6: Mount Popa, 7: 30 miles northwest of Toungoo, 8: Bago Yoma, 9: South Zamayi Reserve, 10: Myogyi Monastery, 11: Panlaung-Pyadalin Cave Wildlife Sanctuary, 12: Mount Yathae Pyan, 13: Yado, 14: Ho Mu Shu Pass, 15: Gaoligong Mountains National Park, 16: Cadu Ciaung, 17: Ngapyinin, 18: Lamaing, 19: Nattaung, 20: Gokteik, and 21: Se'en (for additional information see Supplementary Table S1). Underlined sites refer to type localities of examined holotypes (16: Presbytis melamera, 21: Pithecus shanicus).
Figure 98‒99 in Asian cave-adapted diplurans, with the description of two new genera and four new species (Arthropoda, Hexapoda, Entognatha)
Figure 98‒99. Distribution maps of cave-adapted diplurans in Asia: Campodeinae Condé, 1956 (red circles), Plusiocampinae Paclt, 1957 (black circles), Lepidocampinae Condé, 1956 (brown circles), Japygidae Haliday, 1864 (red squares). In yellow: karst areas (source: Chen et al. 2017). In orange: deserts (source: Olson & Dinerstein 2002). In violet, encircled by discontinued line: hypogean karst systems (source: Klimchouk 2007). 98. In blue: ice cover and permafrost extent during the Last Glacial Maximum (sources: Ehlers et al. 2011; Lindgren et al. 2016). 99. In blue: areas covered with either continuous or patched permafrost at present (source: Brown et al. 2002).
FIGURE 3 in A new dichromatic species of Myotis (Chiroptera: Vespertilionidae) from the Nimba Mountains, Guinea
FIGURE 3. Portrait of Myotis nimbaensis (AMNH 279589, holotype). A, View of right side of upper body and head showing the pale ventral fur and bright orange fur on the head and the ruff around the neck; also note the brown color of the thumb. B, Anterior view of the left ear showing the pale orange-brown color of the pinna, strong distal emargination, and rounded pinna tip. C, Anterior view of right ear showing the ridges in the pinna and the relative length of the lanceolate tragus, which is slightly less than half the length of the pinna. D, Close-up view of the right side of the head showing the pale skin visible through the fur around eye, mouth, and on the rostrum; also note the strongly tricolored fur on the top of the head.
FIGURE 2 in A new dichromatic species of Myotis (Chiroptera: Vespertilionidae) from the Nimba Mountains, Guinea
FIGURE 2. Photographs of roosting and surrounding habitats at the type locality in the Guinean Nimba Mountains. A, Entrance of Kaiser Adit 1. B, Entrance of Kaiser Adit 3 with harp trap placed for bat capture. C, Ecotone of savanna and gallery forest habitats at the headwaters of the Zié river viewable from where bats were captured at adit entrances.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.