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Data from: Nuclear microsatellite and mitochondrial DNA analyses reveal the regional genetic structure and phylogeographical history of a sanguivorous land leech, Haemadipsa japonica, in Japan
Recent molecular studies have indicated that phylogeographical history of Japanese biota is likely shaped by geohistory along with biological events, such as distribution shifts, isolation, and divergence of populations. However, the genetic structure and phylogeographical history of terrestrial Annelida species, including leech species, are poorly understood. Therefore, we aimed to understand the genetic structure and phylogeographical history across the natural range of Haemadipsa japonica, a sanguivorous land leech species endemic to Japan, by using nine polymorphic nuclear microsatellites (nSSR) and cytochrome oxidase subunit one (COI) sequences of mitochondrial DNA (mtDNA). Analyses using nSSR revealed that H. japonica exhibited a stronger regional genetic differentiation among populations (G'ST = 0.77) than other animal species, probably because of the low mobility of land leech. Analyses using mtDNA indicated that H. japonica exhibited two distinct lineages (A and B), which were estimated to have diverged in the middle Pleistocene and probably because of range fragmentation resulting from climatic change and glacial and interglacial cycles. Lineage A was widely distributed across Japan, and lineage B was found in southwestern Japan. Analyses using nSSR revealed that lineage A was roughly divided into two population groups (i.e., northeastern and southwestern Japan); these analyses also revealed a gradual decrease in genetic diversity with increasing latitude in lineage A and a strong genetic drift in populations of northeastern Japan. Combined with the largely unresolved shallow polytomies from the mtDNA phylogeny, these results implied that lineage A may have undergone a rapid northward migration, probably during the Holocene. Then, the regional genetic structure with local unique gene pools may have been formed within each lineage because of the low mobility of this leech species.
Data from: Spatial overlap in a solitary carnivore: support for the land-tenure, kinship, or resource dispersion hypotheses?
1. There are several alternative hypotheses about the effects of territoriality, kinship, and prey availability on individual carnivore distributions within populations. The first is the land-tenure hypothesis, which predicts that carnivores regulate their density through territoriality and temporal avoidance. The second is the kinship hypothesis, which predicts related individuals will be clumped within populations, and the third is the resource dispersion hypothesis, which suggests that resource richness may explain variable sociality, spatial overlap, or temporary aggregations of conspecifics. 2. Research on the socio-spatial organization of animals is essential in understanding territoriality, intra- and inter-specific competition, and contact rates that influence diverse ecology, including disease transmission between conspecifics and courtship behaviors. 3. We explored these hypotheses with data collected on a solitary carnivore, the cougar (Puma concolor), from 2005 to 2012 in the Southern Yellowstone Ecosystem, Wyoming, USA. We employed 27 annual home ranges for 13 cougars to test whether home range overlap was better explained by land-tenure, kinship, resource dispersion, or some combination of the three. 4. We found support for both the land-tenure and resource dispersion hypotheses, but not for kinship. Cougar sex was the primary driver explaining variation in home range overlap. Males overlapped significantly with females, whereas the remaining dyads (F-F, M-M) overlapped significantly less. In support for the resource dispersion hypothesis, hunting opportunity (the probability of a cougar killing prey in a given location) was often higher in overlapping than in non-overlapping portions of cougar home ranges. In particular, winter hunt opportunity rather than summer hunt opportunity was higher in overlapping portions of female-female and male-female home ranges. 5. Our results may indicate that solitary carnivores are more tolerant of sharing key resources with unrelated conspecifics than previously believed, or at least during periods of high resource availability. Further, our results suggest that the resource dispersion hypothesis, which is typically applied to social species, is applicable in describing the spatial organization of solitary carnivores.
Data from: Functional connectivity in replicated urban landscapes in the land snail (Cornu aspersum)
Urban areas are highly fragmented and thereby exert strong constraints on individual dispersal. Despite this, some species manage to persist in urban areas, such as the garden snail, Cornu aspersum, which is common in cityscapes despite its low mobility. Using landscape genetic approaches, we combined study area replication and multi-scale analysis to determine how landscape composition, configuration, and connectivity influence snail dispersal across urban areas. At the overall landscape scale, areas with a high percentage of roads decreased genetic differentiation between populations. At the population scale, genetic differentiation was positively linked with building surface, the proportion of borders where wooded patches and roads appeared side-by-side and the proportion of borders combining wooded patches and other impervious areas. Analyses based on pairwise genetic distances validated the isolation-by-distance and isolation-by-resistance models for this land snail, with an equal fit to least-cost paths and circuit-theory-based models. Each of the 12 landscapes analyzed separately yielded specific relations to environmental features, whereas analyses integrating all replicates highlighted general common effects. Our results suggest that urban transport infrastructures facilitate passive snail dispersal. At a local scale, corresponding to active dispersal, unfavorable habitats (wooded and impervious areas) isolate populations. This work upholds the use of replicated landscapes to increase the generalizability of landscape genetics results, and shows how multi-scale analyses provide insight to scale-dependent processes.
Data from: Land‐sharing potential of large carnivores in human‐modified landscapes of western India
The current Protected Area (PA)network is not sufficient to ensure long-term persistence of wide-ranging carnivore populations.Within India, this is particularly the case for species that inhabit non-forested areas since PAs disproportionately over-represent forested ecosystems. With growing consideration of human-use landscapes as potential habitats for adaptable large carnivores, India provides a model for studying them in densely populated landscapes, where there is little understanding about human-carnivore interactions in shared spaces. Using key informant interviews and an occupancy modeling framework, we assessed the distribution of three large carnivore species, the leopard Panthera pardus, Indian grey wolf Canis lupus pallipes and striped hyena Hyaena hyaena, across a ~89,000 km2 semi-arid multi-use landscape in western India, and quantified ecological drivers of their presence.The three species occupied 57% (leopard), 64% (wolf) and 75% (hyena) of the landscape of which only 2.6% area is protected as national parks or wildlife sanctuaries. Presence of the three carnivores was differentially favored by certain types of agriculture,while populations of domestic livestock supported them in this landscape with low densities of large wild prey. Our results demonstrate the adaptability of large carnivores in human-modified landscapes and we call for an expansion of the current conservation narratives which currently focus on forested protected areas,to include the high potential that anthropogenic landscapes offer as habitats where people and predators can co-adapt and persist.
Data from: Comparing forest structure and biodiversity on private and public land: secondary tropical dry forests in Costa Rica
Secondary forests constitute a substantial proportion of tropical forestlands. These forests occur on both public and private lands and different underlying environmental variables and management regimes may affect post‐abandonment successional processes and resultant forest structure and biodiversity. We examined whether differences in ownership led to differences in forest structure, tree diversity, and tree species composition across a gradient of soil fertility and forest age. We collected soil samples and surveyed all trees in 82 public and 66 private 0.1‐ha forest plots arrayed across forest age and soil gradients in Guanacaste, Costa Rica. We found that soil fertility appeared to drive the spatial structure of public vs. private ownership; public conservation lands appeared to be non‐randomly located on areas of lower soil fertility. On private lands, areas of crops/pasture appeared to be non‐randomly located on higher soil fertility areas while forests occupied areas of lower soil fertility. We found that forest structure and tree species diversity did not differ significantly between public and private ownership. However, public and private forests differed in tree species composition: 11 percent were more prevalent in public forest and 7 percent were more prevalent in private forest. Swietenia macrophylla, Cedrela odorata, and Astronium graveolens were more prevalent in public forests likely because public forests provide stronger protection for these highly prized timber species. Guazuma ulmifolia was the most abundant tree in private forests likely because this species is widely consumed and dispersed by cattle. Furthermore, some compositional differences appear to result from soil fertility differences due to non‐random placement of public and private land holdings with respect to soil fertility. Land ownership creates a distinctive species composition signature that is likely the result of differences in soil fertility and management between the ownership types. Both biophysical and social variables should be considered to advance understanding of tropical secondary forest structure and biodiversity.
Data from: Land use in mountain grasslands alters drought response and recovery of carbon allocation and plant-microbial interactions
1. Mountain grasslands have recently been exposed to substantial changes in land-use and climate and in the near future will likely face an increased frequency of extreme droughts. To date is not known how the drought responses of carbon (C) allocation, a key process in the C cycle, are affected by land-use changes in mountain grassland. 2. We performed an experimental summer drought on an abandoned grassland and a traditionally managed hay meadow and traced the fate of recent assimilates through the plant-soil continuum. We applied two 13CO2 pulses, at peak drought and in the recovery phase shortly after rewetting. 3. Drought decreased total C uptake in both grassland types and led to a loss of aboveground carbohydrate storage pools. The belowground C allocation to root sucrose was enhanced by drought, especially in the meadow, which also held larger root carbohydrate storage pools. 4. The microbial community of the abandoned grassland comprised more saprotrophic fungal and Gram (+) bacterial markers compared to the meadow. Drought increased the newly introduced AM and saprotrophic fungi:bacteria ratio in both grassland types. At peak drought the 13C transfer into AM fungi, saprotrophic fungi and Gram (-) bacteria was more strongly reduced in the meadow than in the abandoned grassland, which contrasted the patterns of the root carbohydrate pools. 5. In both grassland types the C allocation largely recovered after rewetting. Slowest recovery was found for AM fungi and their 13C uptake. In contrast, all bacterial markers quickly recovered C uptake. In the meadow, where plant nitrate uptake was enhanced after drought, C uptake was even higher than in control plots. 6. Synthesis. Our results suggest that resistance and resilience (i.e. recovery) of plant C dynamics and plant-microbial interactions are negatively related, i.e. high resistance is followed by slow recovery and vice versa. The abandoned grassland was more resistant to drought than the meadow and possibly had a stronger link to AM fungi that could have provided better access to water through the hyphal network. In contrast, meadow communities strongly reduced C allocation to storage and C transfer to the microbial community in the drought phase, but in the recovery phase invested C resources in the bacterial communities to gain more nutrients for regrowth. We conclude that management of mountain grasslands increases their resilience to drought.
Data from: Land-use legacies and present fire regimes interact to mediate herbivory by altering the neighboring plant community
Past and present human activities, such as historic agriculture and fire suppression, are widespread and can create depauperate plant communities. Although many studies show that herbivory on focal plants depends on the density of herbivores or the composition of the surrounding plant community, it is unclear whether anthropogenic changes to plant communities alter herbivory. We tested the hypothesis that human activities that alter the plant community lead to subsequent changes in herbivory. At 20 sites distributed across 80 300 hectares, we conducted a field experiment that manipulated insect herbivore access (full exclosures and pseudo-exclosures) to four focal plant species in longleaf pine woodlands with different land-use histories (post-agricultural sites or non-agricultural sites) and degrees of fire frequency (frequent and infrequent). Plant cover, particularly herbaceous cover, was lower in post-agricultural and fire suppressed woodlands. Density of the dominant insect herbivore at our site (grasshoppers) was positively related to plant cover. Herbivore access reduced biomass of the palatable forb Solidago odora in frequently burned post-agricultural sites and in infrequently burned non-agricultural woodlands and increased mortality of another forb (Pityopsis graminifolia), but did not affect two other less palatable species (Schizachyrium scoparium and Tephrosia virginiana). Herbivory on S. odora exhibited a hump-shaped response to plant cover, with low herbivory at low and high levels of plant cover. Herbivore density had a weak negative effect on herbivory. These findings suggest that changes in plant cover related to past and present human activities can modify damage rates on focal S. odora plants by altering grasshopper foraging behavior rather than by altering local grasshopper density. The resulting changes in herbivory may have the potential to limit natural recovery or restoration efforts by reducing the establishment or performance of palatable plant species.
Data from: Land colonisation by fish is associated with predictable changes in life history
The colonisation of new environments is a central evolutionary process, yet why species make such transitions often remains unknown because of the difficulty in empirically investigating potential mechanisms. The most likely explanation for transitions to new environments is that doing so conveys survival benefits, either in the form of an ecological release or new ecological opportunity. Life history theory makes explicit predictions about how traits linked to survival and reproduction should change with shifts in age-specific mortality. We used these predictions to examine whether a current colonisation of land by fishes might convey survival benefits. We found that blenny species with more terrestrial lifestyles exhibited faster reproductive development and slower growth rates than species with more marine lifestyles; a life history trade off that is consistent with the hypothesis that mortality has become reduced in younger life stages on land. A plausible explanation for such a shift is that an ecological release or opportunity on land has conveyed survival benefits relative to the ancestral marine environment. More generally, our study illustrates how life history theory can be leveraged in novel ways to formulate testable predictions on why organisms might make transitions into novel environments.
Data from: Root community traits along a land use gradient: evidence of a community-level economics spectrum
1. There is a fundamental trade-off between leaf traits associated with either resource acquisition or resource conservation. This gradient of trait variation, called the economics spectrum also applies to fine roots but whether it is consistent for coarse roots or at the plant community level remains untested. 2. We measured a set of morphological and chemical root traits at a community level (functional parameters; FP) in 20 plant communities located along land-use intensity gradients and across 3 climatic zones (Tropical, Mediterranean and Montane). We hypothesized (i) the existence of a root economics spectrum in plant communities consistent within root types (fine, < 2 mm; coarse, 2-5 mm) but that ii) variations in root traits occur with soil depths (top 20 cm of soil and 100-150 cm deep) and iii) along land use gradients thus leading to variation in root FP. 3. Root FP co-varied, in line with the resource acquisition-conservation trade-off, from communities with root FP syndromes associated to resource acquisition (e.g. high specific root length, SRL; thin diameters and low root dry matter contents, RDMC) to root FP syndromes associated with resource conservation (e.g. low SRL, thick diameters and high RDMC). This pattern was consistent for both fine and coarse roots indicating a strong consistency of a trade-off between resource acquisition and conservation for plant roots. 4. Roots had different suites of traits at different depths, suggesting a disparity in root function and exploitation capacities. Shallow, fine roots were thinner, richer in nitrogen and with lower lignin concentrations associated to greater exploitation capacities compared to deep, fine roots. However, shallow coarse roots were richer in nitrogen, carbon and soluble concentrations than deep, coarse roots. 5. Fine root parameters of highly disturbed, herbaceous dominated plant communities in poorer soils were associated to foraging strategies, i.e. greater SRL and lower lignin and RDMC than those from less disturbed communities. Coarse roots however, were less sensitive to the land use gradient. 6. Synthesis This study demonstrates the existence of a general trade-off in root construction at a community level, which operates within all root types suggesting that all plant tissues are controlled by the trade-off between resource acquisition and conservation.
Data from: Rapid, habitat-related evolution of land snail colour morphs on reclaimed land
I made use of the known dates of reclamation (and of afforestations) in the IJsselmeerpolders in The Netherlands to assess evolutionary adaptation in Cepaea nemoralis. At 12 localities (three in each polder), I sampled a total of 4390 adult individuals in paired open and shaded habitats, on average 233 m apart, and scored these for genetic shell colour polymorphisms. The results show (highly) significant differentiation at most localities, although the genes involved differed per locality. Overall, though, populations in shaded habitats had evolved towards darker shells than those in adjacent open habitats, whereas a 'Cain & Sheppard' diagram (proportion yellow shells plotted against 'effectively unbanded' shells) failed to reveal a clear pattern. This might suggest that thermal selection is more important than visual selection in generating this pattern. Trait differentiation, regardless of whether they were plotted against polder age or habitat age, showed a linear increase of differentiation with time, corresponding to a mean rate of trait evolution of 15–31 kilodarwin. In conclusion, C. nemoralis is capable of rapid and considerable evolutionary differentiation over 1–25 snail generations, though equilibrium may be reached only at longer time scales.
Data from: The contribution of land tenure diversity to the spatial resilience of protected area networks
1. The relationship between diversity and resilience is relatively well-established for ecological systems, but remains much less explored for socioeconomic systems. Institutional diversity may have particular relevance for protected areas, whose managerial responses to environmental change depend on their legal basis, ability to make and enforce rules, and socio-political acceptance and endorsement. 2. Protected area expansion strategies are increasingly turning to private land conservation to increase the configuration and connectivity of national protected area networks. Yet we know little about the relative role of privately-owned protected areas in protecting threatened and poorly protected (under-represented) habitats, and in the overall connectivity of the national protected area network. 3. We present an empirical assessment of protected area tenure diversity across South Africa. 4. Privately-owned protected areas comprise 25.58% (2878422.26 ha) of the area of the total protected area estate. 5. Private nature reserves emerged as the dominant protected area type in under-represented and threatened habitats, protecting, on average, 32%, 38%, and 41%, respectively, of poorly protected, threatened and endangered vegetation classes. 6. Private nature reserves had the largest overall effect, compared to other protected area types, on connectivity within the national network. A spatially randomised comparison showed that privately-owned protected areas are over-dispersed and more strategically positioned to connect other types of protected areas than would be expected by chance from their extent and abundance. 7. Our results suggest that privately-owned protected areas enhance the resilience of the national protected area network, making it more extensive and better-connected, with greater levels of habitat redundancy. More generally, our analysis highlights the potentially valuable role of institutional diversity in building resilient habitat networks for biodiversity conservation.
Data from: Land-use history alters contemporary insect herbivore community composition and decouples plant-herbivore relationships
1. Past land use can create altered soil conditions and plant communities that persist for decades, although the effects of these altered conditions on consumers are rarely investigated. 2. Using a large-scale field study at 36 sites in longleaf pine (Pinus palustris) woodlands, we examined whether historic agricultural land use leads to differences in the abundance and community composition of insect herbivores (grasshoppers, families Acrididae and Tettigoniidae). 3. We measured the cover of six plant functional groups and several environmental variables to determine whether historic agricultural land use affects the relationships between plant cover or environmental conditions and grasshopper assemblages. 4. Land-use history had taxa-specific effects and interacted with herbaceous plant cover to alter grasshopper abundances, leading to significant changes in community composition. Abundance of most grasshopper taxa increased with herbaceous cover in woodlands with no history of agriculture, but there was no relationship in post-agricultural woodlands. We also found that grasshopper abundance was negatively correlated with leaf litter cover. Soil hardness was greater in post-agricultural sites (i.e. more compacted) and was associated with grasshopper community composition. Both herbaceous cover and leaf litter cover are influenced by fire frequency, suggesting a potential indirect role of fire on grasshopper assemblages. 5. Our results demonstrate that historic land use may create persistent differences in the composition of grasshopper assemblages, while contemporary disturbances (e.g. prescribed fire) may be important for determining the abundance of grasshoppers, largely through the effect of fire on plants and leaf litter. Therefore, our results suggest that changes in the contemporary management regimes (e.g. increasing prescribed fire) may not be sufficient to shift the structure of grasshopper communities in post-agricultural sites towards communities in non-agricultural habitats. Rather, repairing degraded soil conditions and restoring plant communities are likely necessary for restoring grasshopper assemblages in post-agricultural woodlands.
Data from: Bachelors level soil science training at land grant institutions in the USA and its territories
Concern over the status of soil science education in the USA has led to a number of publications in recent years that track trends in student enrollment and offer suggestions for attracting more students to soil science. However, there is little information about changes in the number of degree programs that prepare students for careers as soil scientists, and such changes are obviously an important measure of the status of our field. This study established criteria to identify bachelor's degree programs that prepare students for soil science careers and used websites at land grant colleges to review the degree offerings of these schools in USA states and territories to determine if they met the established criteria. Fifty-nine land grant colleges were identified that offer bachelor's degree programs that prepare students for soil science careers, with a total of 61 degree programs since two of the schools had two separate bachelor's degrees that met the established criteria. This study provides guidelines for conducting similar future studies and a baseline against which they can be compared to allow us to determine whether we are gaining or losing soil science programs at the land grant colleges over time.
Data from: Birds land reliably on complex surfaces by adapting their foot-surface interactions upon contact
Birds land on a wide range of complex surfaces, yet it is unclear how they grasp a perch reliably. Here, we show how Pacific parrotlets exhibit stereotyped leg and wing dynamics regardless of perch diameter and texture, but foot, toe, and claw kinematics become surface-specific upon touchdown. A new dynamic grasping model, which integrates our detailed measurements, reveals how birds stabilize their grasp. They combine predictable toe pad friction with probabilistic friction from their claws, which they drag to find surface asperities—dragging further when they can squeeze less. Remarkably, parrotlet claws can undergo superfast movements, within 1–2 ms, on moderately slippery surfaces to find more secure asperities when necessary. With this strategy, they first ramp up safety margins by squeezing before relaxing their grasp. The model further shows it is advantageous to be small for stable perching when high friction relative to normal force is required because claws can find more usable surface, but this trend reverses when required friction shrinks. This explains how many animals and robots may grasp complex surfaces reliably.
Disruptive selection of shell colour in land snails: a mark–recapture study of Euhadra peliomphala simodae
<p>Many theoretical studies have suggested that disruptive selection plays an important role in phenotypic divergence, but few studies have determined the action of disruptive selection on phenotypic divergence via field studies. This study investigated the effect of disruptive selection on shell colour polymorphism in the Japanese land snail <i>Euhadra peliomphala simodae</i> to determine whether extreme phenotypes of snail shell colour are favored over intermediate phenotypes<i>.</i> We conducted field surveys on an oceanic island with black, yellow, and intermediate-coloured <i>E. p. simodae</i>snails, capturing and marking approximately 1,800 individual snail and monitoring their survival over 18 months. We quantified their shell colours against images and examined the frequency distribution of shell colour variation. The variation exhibited a bimodal distribution with a far lower frequency of intermediate-coloured snails than of black oryellow snails. The population sizes of the three snail groups fluctuated synchronously with the changing seasons. Bayesian estimates showed lower survival rates for the juvenile intermediate-coloured snails than for juvenile black and yellow snails, implying there was disruptive selection associated with shell colour. We suggest this disruptive selection may have resulted in the evolutionary divergence of the snail's shell colour within the lineage having high shell colour variations.</p>
Data from: Effects of land use and climate on the distribution of the Jungle Nightjar Caprimulgus indicus in Hokkaido, northern Japan
Although the relative importance of land use and climate to large-scale bird distributions has received great attention, it is difficult to separate the effects of land use and climate, and there are few studies on bird abundance distributions on a large scale. Here, we examined the effects of land use and climate on the abundance of the nocturnal Jungle Nightjar Caprimulgus indicus in Hokkaido, northern Japan. We chose 125 sampling sites with low correlations (|r| < 0.58) between land use and climate, and combined a playback method with a hierarchical model (N-mixture model). We thereby accounted for the possibility that we could not detect all individuals during the field survey. Results show that Jungle Nightjar abundance was greater at sites within a 4-km radius of moderate forest cover (~75%) and with high average temperatures during the breeding season. Moreover, the effects of land-use were greater than those of climate. Mapping predictions of Jungle Nightjar abundance indicated that suitable areas are distributed in southern and central Hokkaido and around the margins of montane zones. Factoring in the covariation of land use and climate, land use may be the most important driver of the distribution of the Jungle Nightjar in Hokkaido.
Data from: Ontogeny of the Furongian (late Cambrian) trilobite Proceratopyge cf. P. Lata Whitehouse from northern Victoria Land, Antarctica, and the evolution of metamorphosis in trilobites
There were multiple origins of metamorphosis-undergoing protaspides in trilobite evolution: within the superfamilies Remopleuridioidea, Trinucleoidea, and within the Order Asaphida. Recent studies have revealed that the protaspides of the Cambrian representatives of the Remopleuridioidea and the Trinucleoidea did not undergo metamorphosis. However, ontogeny of the Cambrian members of the Order Asaphida has remained unknown. This study documents the ontogeny of the Furongian asaphoidean ceratopygid trilobite, Proceratopyge cf. P. lata Whitehouse, from northern Victoria Land, Antarctica. Two stages for the protaspid phase, five developmental stages for the post-protaspid cranidia, and ten stages for the post-protaspid pygidia have been identified. Interestingly, the protaspis directly developed into a meraspis without metamorphosis. A new cladistic analysis resulted in a single most parsimonious tree, according to which the presence of the bulbous commutavi protaspis turns out to be a synapomorphy for Asaphidae + Cyclopygoidea, not a synapomorphy for the Order Asaphida as previously suggested. In addition, it is inferred that there was convergent evolution of indirectly-developing commutavi protaspides during the Furongian and Early Ordovician. Metamorphosis-entailing planktonic larvae evolved in many different metazoan lineages near the Cambrian–Ordovician transition, due to the escalating ecological pressure of the Great Ordovician Biodiversification Event. Since the bulbous commutavi protaspid morphology is thought to be an adaptation for a planktonic life mode, the convergent evolution of the indirect development in the three trilobite lineages at this period might have been a result of adaptation to the early phase of the Great Ordovician Biodiversification Event.
Data from: Population variation in the life history of a land fish, Alticus arnoldorum, and the effects of predation and density
Life history variation can often reflect differences in age-specific mortality within populations, with the general expectation that reproduction should be shifted away from ages experiencing increased mortality. Investigators of life history in vertebrates frequently focus on the impact of predation, but there is increasing evidence that predation may have unexpected impacts on population density that in turn prompt unexpected changes in life history. There are also other reasons why density might impact life history independently of predation or mortality more generally. We investigated the consequences of predation and density on life history variation among populations of the Pacific leaping blenny, Alticus arnoldorum. This fish from the island of Guam spends its adult life out of the water on rocks in the splash zone, where it is vulnerable to predation and can be expected to be sensitive to changes in population density that impact resource availability. We found populations invested more in reproduction as predation decreased, while growth rate varied primarily in response to population density. These differences in life history among populations are likely plastic given the extensive gene flow among populations revealed by a previous study. The influence of predation and density on life history was unlikely to have operated independently of each other, with predation rate tending to be associated with reduced population densities. Taken together, our results suggest predation and density can have complex influences on life history, and that plastic life history traits could allow populations to persist in new or rapidly changing environments.
Data from: The consequences of land sparing for birds in the United Kingdom
1. Land sparing has been proposed as a strategy to reconcile biodiversity conservation with agricultural production, with empirical studies on five continents indicating that most species would benefit if food demand was met through high-yield farming combined with the protection or restoration of natural habitat. 2. Most such studies come from landscapes covered by large areas of natural habitat and without a long history of intense human modification. However, much of Europe, consists of human-dominated landscapes, where biodiversity responses to land sparing may differ. To test this, we use estimates of bird population density in different (semi-)natural habitats, and forecasts of population density in farmland habitat, to assess the future consequences for birds of land-sparing scenarios in the United Kingdom. 3. Our scenarios predict that whilst up to 18 of the 156 species assessed (predominantly farmland associated species) might decline in UK conservation status under land sparing, up to 35 UK bird species (mainly woodland and wetland species) might improve in status. This contrasts with a maximum of 8 species likely to improve in conservation status without land sparing, with up to 7 species deteriorating. 4. Combining land sparing with demand management measures (reducing food waste and the consumption of animal products) led to more positive population changes under all scenarios. 5. Synthesis and applications. Land sparing has the potential to benefit UK bird populations in aggregate but would likely have negative impacts on farmland bird species. These findings are likely to be applicable across human-dominated landscapes beyond the UK, though effects on other taxa, implementation mechanisms, and the sustainability of higher yields all require careful consideration.
Data from: Present conditions may mediate the legacy effect of past land-use changes on species richness and composition of above- and below-ground assemblages
1. In forest ecosystems, the influence of landscape history on contemporary biodiversity patterns has been shown to provide a convenient framework to explain shifts in plant assemblages. However, very few studies have controlled for present human-induced activities when analyzing the effect of forest continuity on community structures. By cutting and removing trees, foresters substantially change stand ecological conditions, with consequences on biodiversity patterns. Disentangling the effect of past and present human activities on biodiversity is thus crucial for ecosystem management and conservation. 2. We explored the response of plant and springtail species richness and composition to forest continuity (ancient vs recent) in montane forests, while controlling for stand maturity (mature vs overmature). We established 70 sites in landscapes dominated by unfragmented ancient forests where we surveyed plants and assessed springtails by analyzing environmental DNA. 3. Neither plant nor springtail species richness was influenced by forest continuity or by stand maturity. Instead, site-specific characteristics, especially soil properties and canopy openness, were of major importance in shaping above- and below-ground richness. 4. For plant and springtail species composition, the effect of forest continuity was mediated by stand maturity. Thus, both plants and springtails showed a convergence in assemblage patterns with the increasing availability of overmature stand attributes. Moreover, soil and stand-scale factors were evidently more important than landscape-scale factors in shaping above- and below-ground species composition. 5. Synthesis. We clearly demonstrated that biodiversity patterns are more strongly influenced by present human-induced activities than by past human-induced activities. In the Northern Alps where our study sites were located, the colonization credit of most species has been paid off and the transient biodiversity deficit usually related to forest continuity has moved toward equilibrium. These findings emphasize the necessity to better control for local-scale factors when analyzing the response of biodiversity to forest continuity; we call for more research into the effects of forest continuity in unfragmented mountain forests.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.