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Figure 4 in A new order of fishes as hosts of blood flukes (Aporocotylidae); description of a new genus and three new species infecting squirrelfishes (Holocentriformes, Holocentridae) on the Great Barrier Reef
Figure 4. Relationships between species of Holocentricola and other members of the Aporocotylidae based on phylogenetic analysis of the 28S dataset. Bayesian inference posterior probabilities values are shown above the nodes and maximum likelihood bootstrap support shown below; values of <85 and <0.85 not shown. The scale-bar indicates expected number of substitutions per site.
Figure 3 in A new order of fishes as hosts of blood flukes (Aporocotylidae); description of a new genus and three new species infecting squirrelfishes (Holocentriformes, Holocentridae) on the Great Barrier Reef
Figure 3. Species of Holocentricola from Great Barrier Reef Holocentridae, terminal genitalia, dorsal views; spines illustrated are ventral. (A) Holocentricola rufus n. sp. ex Sargocentron rubrum from off Heron Island (paratype, QM G239440); (B) Holocentricola exilis n. sp. ex Neoniphon sammara from off Lizard Island (paratype, QM G239119); (C) Holocentricola coronatus n. sp. ex Sargocentron diadema from off Lizard Island (paratype, QM G239126). Abbreviations: CS, cirrus-sac; ER, egg reservoir; FGP, female genital pore; MGP, male genital pore; Od, oviduct; Oö, oötype; Ov, ovary; PP, pars prostatica; SV, seminal vesicle; Ut, uterus; VD, vas deferens; VitD, vitelline duct. Scale-bars: A–C, 100 µm.
Figure 2 in A new order of fishes as hosts of blood flukes (Aporocotylidae); description of a new genus and three new species infecting squirrelfishes (Holocentriformes, Holocentridae) on the Great Barrier Reef
Figure 2. Species of Holocentricola from Great Barrier Reef Holocentridae, whole worms, ventral views. (A) Holocentricola rufus n. sp. ex Sargocentron rubrum from off Heron Island (holotype, QM G239429); (B) Holocentricola exilis n. sp. ex Neoniphon sammara from off Lizard Island (paratype, QM G239111); (C) Holocentricola coronatus n. sp. ex Sargocentron diadema from off Lizard Island (holotype, QM G239125). Scale-bars: A–C, 200 µm.
Figure 1 in Brodifacoum residues in fish three years after an island-wide rat eradication attempt in the tropical Pacific
Figure 1. Wake Island with the seven sampling locations marked by arrows. Site names include: 1 – Peale Lagoon Side, 2 – Ioke Beach House, 3 – Waterplant Outfall, 4 – Battery Dump Pond, 5 – Southern Runway Windsock (not sampled in this study), 6 – Old AF Beach House, 7 – Nitro Rock. Image courtesy of U.S. Air Force Civil Engineer Center.
Fig 5 in Multigene phylogeny reveals a new Iranian earthworm genus (Lumbricidae: Philomontanus) with three new species
Fig 5. Sampling sites of new species. (A1, A2) Mazandaran, Abbasabad (36.72 o N; 51.11o E), Elburz Mountains, sampling site of Philomontanus sarii sp. nov. (B1, B2) Kurdistan, Kamyaran (35.49o N; 46.35o E), Zagros Mountains, sampling site of Philomontanus baloutchi sp. nov. (C1, C2) Kurdistan, Baneh (35.99o N; 45.88o E), Zagros Mountains, sampling site of Philomontanus mahmoudi sp.nov. https://doi.org/10.1371/journal.pone.0208904.g005
Fig 3 in Multigene phylogeny reveals a new Iranian earthworm genus (Lumbricidae: Philomontanus) with three new species
Fig 3. Ventrolateral view of the Philomontanus species. Arrows point to tubercula pubertatis A. Philomontanus sarii sp. nov. B. Philomontanus mahmoudi sp. nov. C. Philomontanus baloutchi sp. nov.. https://doi.org/10.1371/journal.pone.0208904.g003
Fig 4 in Multigene phylogeny reveals a new Iranian earthworm genus (Lumbricidae: Philomontanus) with three new species
Fig 4. Diagram of external morphology of the Philomontanus species. Yellow, Spermathecae Blue, Male pore Brown, Clitellum Green, Tubercula pubertatis Orange, Variation of Tubercula pubertatis. https://doi.org/10.1371/journal.pone.0208904.g004
Fig 1 in Multigene phylogeny reveals a new Iranian earthworm genus (Lumbricidae: Philomontanus) with three new species
Fig 1. Study area in the Zagros and Elburz Mountains of Iran (This map is originally created by first author, using ArcGIS, Mapping & Analytical platform. Red, Type locality of Philomontanus sarii sp. nov, Elburz Mountains. Green, Type locality of Philomontanus mahmoudi sp. nov, Zagros Mountains. Blue, Type locality of Philomontanus baloutchi sp. nov, Zagros Mountains. https://doi.org/10.1371/journal.pone.0208904.g001
Fig. 1 in Response of Sphagnum Testate Amoebae to Drainage, Subsequent Re-wetting and Associated Changes in the Moss Carpet - Results from a Three Year Mesocosm Experiment
Fig. 1. Left: schematic cross-section through a mesocosm showing the peat and Sphagnum layer. Right: expected evolution of community structure or traits over the stress and recovery phases. At the onset of the experiment (T0) the community included the whole range of species living in pool, lawn and hummock, taken in a natural Sphagnum peatland. D1 is the point of maximum disturbance effect and R1 and R2 are sampling points during the recovery phase. Dotted lines represented the possible evolution of both species community structure and community weighted mean of functional traits in response to disturbance. Full recovery depended on the survival potential of species. The new equilibrium represents the situation when the local conditions or present species pool do not allow a fully recovery of original state. In our case this is due to the fact that some species are likely to be lost during the disturbance phase.
Fig. 3 in Response of Sphagnum Testate Amoebae to Drainage, Subsequent Re-wetting and Associated Changes in the Moss Carpet - Results from a Three Year Mesocosm Experiment
Fig. 3. Evolution of standardized effect size of mean pairwise distance between sampling plots relatively to a null model (random species matrix with respect to observed species richness, see text for details) of testate amoeba community weighted mean (CWM) of functional trait data from a Sphagnum fallax mesocosm experiment simulating water table changes. The mean pairwise distance represents the distance separating communities based on the pool of functional traits. Horizontal grey dotted line represents p-value of 0.05, points below the line are significantly different from the null model. Each replicate was represented separately, with a grey scale.
Fig. 2 in Response of Sphagnum Testate Amoebae to Drainage, Subsequent Re-wetting and Associated Changes in the Moss Carpet - Results from a Three Year Mesocosm Experiment
Fig. 2. Principal component analyses (PCA) of a) testate amoeba species and b) community weighted mean (CWM) of functional traits in Sphagnum fallax from a mesocosm experiment simulating water table changes. The species dataset was Hellinger transformed and the CWM data were scaled. Projection of descriptors (left) and samples (right), scaling 2. On the right plots, arrows represent the time line for each treatment (mean coordinates of the five sampling plots of each treatment and time). In both PCAs, axes 1 and 2 were the only significant axes and accounted respectively for 60.4% (species based) and 80.2% (CWM based) of the variance. Characteristic plots for wet and intermediate treatments were labelled. Taxa abbreviations: Amp_wri: Amphitrema wrightianum, Pse_gra: Pseudodifflugia gracilis, Arc_fla: Archerella flavum, Cyc_arc: Cyclopyxis arcelloides, Phy_gri: Physochila griseola, Hya_pap: Hyalosphenia papilio, Cen_acu: Centropyxis aculeata, Hel_syl: Heleopera sylvatica, Cry_ovi: Cryptodifflugia oviformis, Eug_cil: Euglypha ciliata, Phr_acr: Phryganella acropodia, Hel_ros: Heleopera rosea, Cor_dub: Corythion dubium, Neb_tin: Nebela tincta s.l., Arc_cat: Arcella catinus, Ass_mus: Assulina muscorum.
Fig. 8 in New discoveries of the genus Thuricola Kent, 1881 (Ciliophora, Peritrichia, Vaginicolidae), with descriptions of three poorly known species from China
Fig. 8. Phylogenetic tree inferred from SSU rDNA sequences, revealing the phylogenetic positions of Thuricola folliculata, Thuricola kellicottiana and Thuricola obconica (red fonts). The two sequences marked by stars (KJ649621 and KU363269) are probably misidentified. Numbers near nodes denote Maximum likelihood (ML) bootstrap values and Bayesian inference (BI) posterior probability, respectively. The scale bar indicates five substitutions per 100 nucleotides. Systematic classification follows Sun et al. (2012) and Gao et al. (2016b).
Fig. 6 in New discoveries of the genus Thuricola Kent, 1881 (Ciliophora, Peritrichia, Vaginicolidae), with descriptions of three poorly known species from China
Fig. 6. Morphology and ciliature of Thuricola folliculata. (A) Narrow side view of an individual with two zooids. (B) Narrow side view of an individual with single zooid. (C) Wide side view of an individual with two zooids. (D) Macronucleus in vivo. (E) Narrow side view of lorica. (F) Wide side view of lorica. (G) Detail of pellicle, to show the transverse striations and aboral trochal band. (H) Macronucleus after protargol staining. (I) Oral ciliature. (J) Detail of infundibular polykineties. (K) T. folliculata from Kent (1881). (L) Cothurnia regalis from Penard (1914) (synonym of T. folliculata). (M) Cothurnia crystallina from Penard (1922) (synonym of T. folliculata). (N) T. folliculata from Kahl (1935). (O) T. folliculata from Sommer (1951). (P) T. obliqua from Sommer (1951). (Q) T. folliculata from Liebmann (1962). (R) T. folliculata from Nusch (1970). (S) Ciliature of T. folliculata from Eperson (1982). (T) T. folliculata from Jiang et al. (1983). (U) T. folliculata from Shen and Gu (2016). EM1–2, epistomial membrane 1–2; G, germinal kinety; H, haplokinety; JM, junctional membrane; Ma, macronucleus; Po, polykinety; P1–3, infundibular polykineties 1–3; TB, trochal band; Val, valve. Scale bars = 100 μm.
Fig. 4 in New discoveries of the genus Thuricola Kent, 1881 (Ciliophora, Peritrichia, Vaginicolidae), with descriptions of three poorly known species from China
Fig. 4. Morphology and ciliature of Thuricola kellicottiana. (A) Narrow side view of an individual with two zooids. (B) Narrow side view of an individual with single zooid. (C) Wide side view of an individual with single zooid, to show macronucleus in vivo. (D) Narrow side view of lorica. (E) Wide side view of lorica. (F) Detail of pellicle, to show the transverse striations and aboral trochal band. (G) Macronucleus after protargol staining. (H) Model pattern of oral ciliature. (I) Oral ciliature. (J) T. innixa from Kellicottiana, 1884. (K) Thuricolopsis kellicottiana from Stokes, 1887. (L) Cothurnia castellensis from Penard, 1914. (M) T. amphora from Sommer, 1951. (N) T. kellicottiana from Bernerth, 1982. (O) T. kellicottiana from Nusch, 1970. (P) T. kellicottiana from Trueba, 1980. (Q) T. kellicottiana from Shen and Gu (2016). EM1–2, epistomial membrane 1–2; G, germinal kinety; H, haplokinety; JM, junctional membrane; Ma, macronucleus; Po, polykinety; P1–3, infundibular polykineties 1–3; Sp, spine; TB: trochal band; Val, valve. Scale bars = 100 μm.
Fig. 3 in New discoveries of the genus Thuricola Kent, 1881 (Ciliophora, Peritrichia, Vaginicolidae), with descriptions of three poorly known species from China
Fig. 3. Photomicrographs of Thuricola obconica from life (A–N) and after protargol staining (O–S). (A) Narrow side view of an individual with two zooids. (B) Narrow side view of an individual with single zooid. (C) Wide side view of an individual with two zooids. (D, E) Narrow side view of different individuals. (F–H) Narrow side view of different curved loricas. (I) Anterior portion of body, arrow marks contractile vacuole. (J) Posterior portion, arrowhead marks junctional membrane around the inner stalk. (K) Posterior portion, arrow marks the expanded lorica base, arrowheads mark the junctional membrane. (L) Wide side view of lorica, arrowhead marks the junctional membrane. (M) Narrow side view of anterior portion of lorica, arrow marks valve. (N) Detail of pellicle, arrowhead marks aboral trochal band. (O–Q) Ciliature of three specimens, arrow marks trochal band. (R) Oral ciliature, arrow marks the epistomial membrane 2. (S) Detail of infundibular polykineties 1–3. EM1, epistomial membrane 1; G, germinal kinety; H, haplokinety; Ma, macronucleus; P1–3, infundibular polykineties 1–3. Scale bars = 100 μm (A–H); 50 μm (O–Q).
Fig. 2 in New discoveries of the genus Thuricola Kent, 1881 (Ciliophora, Peritrichia, Vaginicolidae), with descriptions of three poorly known species from China
Fig. 2. Morphology and ciliature of Thuricola obconica. (A) Narrow side view of an individual with two zooids. (B) Narrow side view of an individual with single zooid. (C) Narrow side view of an individual with single zooid, to show macronucleus. (D) Wide side view of an individual with two zooids. (E) Wide side view of lorica. (F–H) Narrow side view of different curved lorica. (I) Base of lorica. (J) Detail of pellicle, to show the transverse striations and trochal band. (K) Model pattern of oral ciliature. (L) Macronucleus after protargol staining. (M) Oral ciliature. (N) Detail of infundibular polykineties. (O) T. obconica from Kahl (1933). (P) T. obconica from Kahl (1935). (Q) T. obconica from Bock (1952). (R) T. kamptostoma from Bock (1952) (synonym of T. obconica). (S) T. obconica from Biernacka (1963) (pos- sible misidentification). (T) T. obconica from Küsters (1974) (probably misidentified). (U) T. obconica from Shen & Gu (2016). EM1–2, epistomial membrane 1–2; G, germinal kinety; H, haplokinety; JM, junctional membrane; LB, lorica base; Ma, macronucleus; Po, polykinety; P1–3, infundibular polykineties 1–3; TB, trochal band; Val, valve. Scale bars = 100 μm (A, B, D); 50 μm (E–H, L, O–U).
Fig. 6 in Morphology of Three Aloricate Choreotrich ciliates, Including Description of a New Species Parastrombidinopsis costalis sp. n. (Ciliophora, Choreotrichia), and phylogeny of the genus Parastrombidinopsis
Fig. 6. Drawings and photomicrographs of Parastrombidinopsis minima from life (A, E–G) and after protargol staining (B–D, H–M). (A, F, G) Views of three individuals showing the body shape. (B, C) Ventral and dorsal views of the same specimen showing the ciliature. (D, H, I) Detail of collar membranelles; the arrows mark the ventral gap. (E) From Tsai et al. (2008). (J) Somatic ciliature. (K) An early divider; arrowhead marks the oral primordium. (L, M) Ventral and dorsal views of same specimen showing the ciliature. CM, collar membranelles; E, endoral membrane; SK, somatic kinety. Scale bars: 25 μm.
Fig. 7 in Morphology of Three Aloricate Choreotrich ciliates, Including Description of a New Species Parastrombidinopsis costalis sp. n. (Ciliophora, Choreotrichia), and phylogeny of the genus Parastrombidinopsis
Fig. 7. Bayesian-Inference tree inferred from SSU rRNA gene sequences, indicating the polygenetic positions of species of the genus Parastrombidinopsis. Numbers at the nodes represent support values in the following order: BI posterior probabilities and ML bootstrap values. Disagreements in topology between the BI and ML trees are indicated by a hyphen. Nodes that were well supported (1.00 BI; 100% ML) are represented by filled circles. Bar = 5 substitutions per 100 nucleotide positions. Species sequenced in the present study are shown in bold type.
Fig. 4 in Morphology of Three Aloricate Choreotrich ciliates, Including Description of a New Species Parastrombidinopsis costalis sp. n. (Ciliophora, Choreotrichia), and phylogeny of the genus Parastrombidinopsis
Fig. 4. Parastrombidinopsis pelagica (Fauré-Fremiet, 1924) comb. n. from life (A–D, F) and after protargol staining (E, G–I). (A, B) Ventral views of two individuals. (C) Swimming pattern. (D) Different individuals to show the variations in body shape. (E) Detail of oral membranelles. (F) From Fauré-Fremiet (1924). (G, H) Ventral and dorsal views of the same specimen showing the ciliature. (I) Lateral view of a specimen. CM, collar membranelles; Ma, macronucleus; Mi, micronucleus; SK, somatic kinety. Scale bars: 50 μm.
Fig. 5 in New discoveries of the genus Thuricola Kent, 1881 (Ciliophora, Peritrichia, Vaginicolidae), with descriptions of three poorly known species from China
Fig. 5. Photomicrographs of Thuricola kellicottiana in vivo (A–P) and after protargol staining (Q–T). (A–C) Narrow side view of individuals with two zooids (A, B) and single zooid (C). (D) Wide side view of a single zooid individual. (E–G) Narrow side views of different individuals, arrowheads mark contractile vacuoles. (H) Detail of pellicle, to show the transverse striations. (I) Narrow side view of lorica, arrowhead marks the valve spine. (J–L) Wide side view of lorica, arrows mark junctional membrane, arrowheads mark valve spine. (O) Narrow side view of anterior portion of lorica, arrows mark valves, arrowheads marks valve spine. (P) Posterior portion, arrows mark the bulge in the lorica, arrowhead marks junctional membrane around the inner stalk. (Q, R) Ciliature of two specimens, arrowhead marks trochal band. (S) Oral ciliature, arrow marks epistomial membrane 2. (T) Detail of infundibular polykinety 1–3, arrow marks epistomial membrane 2. G, germinal kinety; H, haplokinety; Ma, macronucleus; P1–3, infundibular polykineties 1–3. Scale bars = 100 μm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.