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3,878 results for “Molecular Data”
Figure 1 in Morphological and molecular data confirm species assignment and dispersal of the genus Ligia (Crustacea: Isopoda: Ligiidae) along northeastern coastal China and East Asia
Figure 1. Sample locations, phylogenetic relationships and evolutionary networks of Ligia spp. along northeastern coastal China. (I) Localities and sequencing sample size of Ligia cinerascens and Ligia exotica. The coloured pie chart in the map shows haplotypes and sequencing sample size. The coloured seashores indicate the distribution range of each species (or clade). The colours of the outer ring represent the species assignment and those of the inner pie chart show the different genetic clades. The abbreviations of each location and the sample size are detailed in Table 1. (II, III) Minimum spanning network (MSN) among haplotypes for 16S rDNA (II) and cytochrome c oxidase subunit I (cox1) (III) of L. cinerascens and L. exotica. Sampled haplotypes are indicated by circles. Numbers show the expected mutation steps between haplotypes. When the mutation step was equal to 1, it was omitted. (IV) Phylogenetic relationships recovered by neighbor-joining (NJ), maximum parsimony (MP) and Bayesian inference (BI) based on 16SA datasets. The outgroups are Ligia oceanica (Ligiidae) and Idotea baltica (Idoteidae). Values under the branches of the tree indicate bootstrap in NJ, MP and Bayesian posterior probability (BPP) from 16SA datasets. The '+' symbol denotes bootstrap or BPP values = 100%, whereas the '−' symbol presents bootstrap or BPP values <50%. Scale bar shows the number of substitutions per site.
FIGURE 3 in Taxonomy of the Oulimnius tuberculatus species group (Coleoptera: Elmidae) based on molecular and morphological data
FIGURE 3. Ventral setation of Oulimnius males: 3a) O. tuberculatus, 3b) O. perezi, 3c) O. sp., 3d) O. bertrandi.
FIGURE 2 in Taxonomy of the Oulimnius tuberculatus species group (Coleoptera: Elmidae) based on molecular and morphological data
FIGURE 2. Generalized diagram of the relationships within the O.tuberculatus species group, with habitus photographs and drawings of aedeagi.
FIGURE 1 in Taxonomy of the Oulimnius tuberculatus species group (Coleoptera: Elmidae) based on molecular and morphological data
FIGURE 1. ML tree produced in RAxML software. Numbers along branchens: bootstrap from RAxML / bootstrap from PAUP / posterior probabilities from MrBayes.
FIGURE 4 in Taxonomy of the Oulimnius tuberculatus species group (Coleoptera: Elmidae) based on molecular and morphological data
FIGURE 4. Geographical distribution of the O. tuberculatus species group (black line—O. tuberculatus, dark field surrounded by black line—O. perezi, white line—O. bertrandi, B&W circles—O. cyneticus, B&W rhomb—O. sp.). (Partly from Jäch et al. 2006 and Rico 1996).
FIGURE 5 in Description of Electrogena sartorii sp. nov., a new representative of the genus Electrogena Zurwerra & Tomka, 1985 (Ephemeroptera: Heptageniidae), from Iran using molecular and morphological data
FIGURE 5. Setae and spines on hind tibia of Anapos kugleri. Abbreviations: orhs: outer row of hair-like setae; orss: outer row of spine-like setae; mrhs: middle row of hair-like setae; mrss: middle row of spine-like setae.
FIGURE 4. Electrogena gibedede, a in Description of Electrogena sartorii sp. nov., a new representative of the genus Electrogena Zurwerra & Tomka, 1985 (Ephemeroptera: Heptageniidae), from Iran using molecular and morphological data
FIGURE 4. Electrogena gibedede, a, first gill; b, seven gill; c, pronotum; d, bristles on the dorsal face of femora; e, glossae and paraglossae.
FIGURE 6. Strobilanthes medahinnensis. A in Strobilanthes medahinnensis (Acanthaceae) a new species, based on morphological and molecular data, from the Peak Wilderness Nature Reserve, Sri Lanka
FIGURE 6. Strobilanthes medahinnensis. A. Flowering branch; B. Inflorescence; C. Leaf D. Inner bract; E: Half flower; F. Calyx; G. Stamens; H. Outermost bract; I. Close up of the leaf surfaces adaxial and abaxial. (Drawn by Rukmal Ratnayake on the holotype).
FIGURE 7. Strobilanthes medahinnensis. A-B in Strobilanthes medahinnensis (Acanthaceae) a new species, based on morphological and molecular data, from the Peak Wilderness Nature Reserve, Sri Lanka
FIGURE 7. Strobilanthes medahinnensis. A-B. Habit; C. Stem; D. Front view of the corolla; E–H. Inflorescence; F. Leaf (adaxial); G. Half flower; I. Leaf (abaxial); J. Inner bract; K. Outermost bract; L. Calyx with Bractiole.
FIGURE 4 in Strobilanthes medahinnensis (Acanthaceae) a new species, based on morphological and molecular data, from the Peak Wilderness Nature Reserve, Sri Lanka
FIGURE 4. Nucleotide variability (Pi) comparison between Strobilanthes medahinnensis and Strobilanthes anceps using the window sliding analysis (window length: 600 bp and step size: 200 bp). The X-axis indicates the position of the midpoint of the window, while Y-axis indicates the nucleotide diversity (Pi) of each window.
FIGURE 3 in Strobilanthes medahinnensis (Acanthaceae) a new species, based on morphological and molecular data, from the Peak Wilderness Nature Reserve, Sri Lanka
FIGURE 3. Chloroplast genome maps of Strobilanthes medahinnensis and Strobilanthes anceps. Genes inside the outer ring are transcribed clockwise, while genes outside the outer ring are transcribed counterclockwise. Genes of different functional groups are shown in colored bars. The inner-circle (dashed gray area) indicates the proportional GC content of the corresponding genes. Regions of the large singlecopy (LSC), small single-copy (SSC), and inverted repeats (IRA and IRB) are indicated.
FIGURE 2 in Strobilanthes medahinnensis (Acanthaceae) a new species, based on morphological and molecular data, from the Peak Wilderness Nature Reserve, Sri Lanka
FIGURE 2. Diagnostic morphological characters of Strobilanthes medahinnensis and Strobilanthes anceps. S. medahinnensis—A. side of the corolla, C. half flower, E. inner bract, G. outermost bract I. calyx, K. inflorescence. S. anceps—B. side of the corolla, D. half flower, F. inner bract, H. outermost bract. J. calyx, L. inflorescence
Figure 1 in Molecular data extend Australian Cricotopus midge (Chironomidae) species diversity, and provide a phylogenetic hypothesis for biogeography and freshwater monitoring
Figure 1. Schematic phylogeny based on a majority rule consensus maximum-likelihood (ML) topology for the reduced data set. Relevant nodal support values are shown, which correspond to Bayesian posterior probabilities and ML bootstrap support, respectively; –, nodes unresolved by ML; *, posterior probabilities of 1.00 or bootstrap support of 100. Thick branches denote Australian clades; thin branches are non-Australian taxa. Geographical distributions and tolerances to ecosystem impact for Australian Cricotopus species are shown according to the inset legend, with the forms of divergent species coded based on assumptions made from the current sampled localities.
Figure 2. Simplified maximum clade credibility chronogram obtained from BEAST with 95 in Phylogenetic position of the endemic Mount Oku rat, Lamottemys okuensis (Rodentia: Muridae), based on molecular and morphological data
Figure 2. Simplified maximum clade credibility chronogram obtained from BEAST with 95% highest posterior density intervals.
Figure 3 in Phylogenetic position of the endemic Mount Oku rat, Lamottemys okuensis (Rodentia: Muridae), based on molecular and morphological data
Figure 3. Morphological strict consensus cladogram inferred from PAUP. Decay index values are indicated for each node.
Figure 1 in Phylogenetic position of the endemic Mount Oku rat, Lamottemys okuensis (Rodentia: Muridae), based on molecular and morphological data
Figure 1. Molecular phylogenetic tree inferred using Bayesian inference for the concatenated data set [cytochrome b: 1140 bp, IRBP (interphotoreceptor retinoid binding protein): 1202 bp, GHR (growth hormone receptor): 922 bp]. The average Bayesian posterior probabilities (left) of two runs, and bootstrap values (>50%, right) calculated for 1000 bootstrap replicates are indicated for each node.
Data from: Descriptive multi-agent epidemiology via molecular screening on Atlantic salmon farms in the northeast Pacific Ocean
<p>Rapid expansion of salmon aquaculture has resulted in high-density populations that host diverse infectious agents, for which surveillance and monitoring are critical to disease management. Screening can reveal infection diversity from which disease arises, differential patterns of infection in live and dead fish that are difficult to collect in wild populations, and potential risks associated with agent transmission between wild and farmed hosts. We report results from a multi-year infectious-agent screening program of farmed salmon in British Columbia, Canada, using quantitative PCR to assess presence and load of 58 infective agents (viruses, bacteria, and eukaryotes) in 2931 Atlantic salmon (Salmo salar). Our analysis reveals temporal trends, agent correlations within hosts, and agent-associated mortality signatures. Multiple agents, most notably Tenacibaculum maritimum, were elevated in dead and dying salmon. We also report detections of agents only recently shown to infect farmed salmon in BC (Atlantic salmon calicivirus, Cutthroat trout virus-2), detection in freshwater hatcheries of two marine agents (Kudoa thyrsites and Tenacibaculum maritimum), and detection in the ocean of a freshwater agent (Flavobacterium psychrophilum). Our results provide information for farm managers, regulators, and conservationists, and enable further work to explore patterns of multi-agent infection and farm/wild transmission risk.</p>
FIGURE 4 in Molecular phylogeny and systematic evaluation of the Caragana opulens species complex (Fabaceae, Papilionoideae) based on the molecular and morphological data
FIGURE 4. Best ML tree retrieved after analysing trnH-psbA data from 17 taxa from C. opulens complex (C. opulens, C. licentina, and C. kanasuensis) the remaining 139 sequences have also been generated new but have not been discussed in the present communication. Outgroups selected from previous studies.
FIGURE 3 in Molecular phylogeny and systematic evaluation of the Caragana opulens species complex (Fabaceae, Papilionoideae) based on the molecular and morphological data
FIGURE 3. Best ML tree retrieved after analysing ITS data from 15 taxa from C. opulens complex (C. opulens, C. licentina, and C. kanasuensis) the remaining 139 sequences have also been generated new but have not been discussed in the present communication. Outgroups selected from previous studies.
FIGURE 2 in Molecular phylogeny and systematic evaluation of the Caragana opulens species complex (Fabaceae, Papilionoideae) based on the molecular and morphological data
FIGURE 2. GIS map showing the distribution of Caragana (blue dot) and the members of the C. opulens species complex (pink dot).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.