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9,882 results for “Scale”

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dryad36/100

Data from: Large-scale mutation in the evolution of a gene complex for cryptic coloration

<p class="western">The types of mutations affecting adaptation in the wild are only beginning to be understood. In particular, whether structural changes shape adaptation by suppressing recombination or by creating new mutations is unresolved. Here we show that multiple, linked but recombining loci underlie cryptic color morphs of <i>Timema chumash </i>stick insects. In a related species, these loci are found in a region of suppressed recombination, forming a supergene. However, in seven species of <i>Timema </i>we find that a mega-base size 'supermutation' has deleted color loci in green morphs. Moreover, we find that balancing selection likely contributes more to maintaining this mutation than does introgression. Our results show how suppressed recombination and large-scale mutation can help package gene complexes into discrete units of diversity, such as morphs, ecotypes, or species.</p>

opencc-zeroAug 2020View details →
dryad36/100

Shared geographic histories and dispersal contribute to congruent phylogenies between amphipods and their microsporidian parasites at regional and global scales

<p>In parasites that strongly rely on a host for dispersal, geographic barriers that act on the host will simultaneously influence parasite distribution as well. If their association persists over macroevolutionary time it may result in congruent phylogenetic and phylogeographic patterns due to shared geographic histories. Here, we investigated the level of congruent evolutionary history at a regional and global scale in a highly specialised parasite taxon infecting hosts with limited dispersal abilities: the microsporidians <i>Dictyocoela</i> spp. and their amphipod hosts. <i>Dictyocoela</i> can be transmitted both vertically and horizontally and is the most common microsporidian genus occurring in amphipods in Eurasia. However, little is known about its distribution elsewhere. We started by conducting molecular screening to detect microsporidian parasites in endemic amphipod species in New Zealand; based on phylogenetic analyses, we identified nine species-level microsporidian taxa including six belonging to <i>Dictyocoela</i>. With a distance-based cophylogenetic analysis at the regional scale, we identified overall congruent phylogenies between <i>Paracalliope</i>, the most common New Zealand freshwater amphipod taxon, and their <i>Dictyocoela</i> parasites. Also, hosts and parasites showed similar phylogeographic patterns suggesting shared biogeographic histories. Similarly, at a global scale, phylogenies of amphipod hosts and their <i>Dictyocoela</i> parasites showed broadly congruent phylogenies. The observed patterns may have resulted from covicariance and/or codispersal, suggesting that the intimate association between amphipods and <i>Dictyocoela</i> may have persisted over macroevolutionary time. We highlight that shared biogeographic histories could play a role in the codiversification of hosts and parasites at a macroevolutionary scale.</p>

opencc-zeroAug 2020View details →
dryad36/100

Data from: The earliest baleen whale of the mediterranean: Large-scale implications of an early miocene thalassotherian mysticete from Piedmont, Italy

The discovery of an Early Miocene chaeomysticete from the Pietra da Cantoni Group in Piedmont (north-western Italy) allowed for the creation of Atlanticetus n. gen. and Atlanticetus lavei n. sp. The new species is represented by a partial skeleton including the earbones and shows anatomical resemblance with Atlanticetus patulus (new combination) from the western North Atlantic. The Early Miocene age of the new specimen supports the view that it represents the oldest record of Chaeomysticeti from the Mediterranean. A new phylogenetic analysis showed that both A. patulus and A. lavei belong to a radiation of basal thalassotherian taxa. The basal thalassotherians are found being monophyletic to the exclusion of Cetotheriidae and Balaenopteroidea. The reconstruction of ancestral characters at selected nodes informs that the group including Atlanticetus and living balaenopterid taxa independently evolved rostra wide at base, anterolateral expansion in the tympanic bulla and a peculiar arrangement of the endocranial foramina of the periotic exhibiting a noteworthy phenomenon of convergent evolution in feeding and hearing functions with Balaenopteridae. The paleobiogeographic analysis showed that the North Pacific was the center of origin of Balaenomorpha (crown mysticetes), Thalassotherii and Balaenoidea. The recurrent invasion of the Mediterranean by balaenomorph mysticetes occurred from both the North Atlantic and North Pacific.

opencc-zeroAug 2020View details →
zenodo36/100

Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin

<p>We prepared these&nbsp;datasets&nbsp;associated with the paper &ldquo;Genome-scale imaging of the 3D organization and transcriptional activity of chromatin&rdquo; published in Cell: <a href="https://doi.org/10.1016/j.cell.2020.07.032">https://doi.org/10.1016/j.cell.2020.07.032</a>.</p> <p>Please find detailed descriptions of individual data files in the README_August 2020.txt.</p> <p>We provide example codes to load and analyze these datasets in:&nbsp;<a href="https://github.com/ZhuangLab/Chromatin_Analysis_2020_cell">https://github.com/ZhuangLab/Chromatin_Analysis_2020_cell</a>.</p> <p>If you use these datasets, please cite our Cell paper.</p>

opencc-by-4.0Aug 2020View details →
dryad36/100

Fine-scale habitat heterogeneity influences browsing damage by elephant and giraffe

Effects of large mammalian herbivores on woody vegetation tend to be heterogeneous in space and time, but the factors that drive such heterogeneity are poorly understood. We examined the influence of fine-scale habitat heterogeneity on the distribution and browsing effects of two of the largest African terrestrial mammals, the elephant and giraffe. We conducted this study within a 120-ha (500 x 2400 m) ForestGEO long-term vegetation monitoring plot located at Mpala Research Center, Kenya. The plot traverses three distinct topographic habitats ('plateau', 'steep slopes', and 'valley') with contrasting elevation, slope, soil properties, and vegetation composition. To quantify browsing damage, we focused on Acacia mellifera, a palatable tree species that occurs across the three habitat categories. Overall tree density, species richness, and diversity was highest on the steep slopes and lowest on the plateau. Acacia mellifera trees were tallest and had the lowest number of stems per tree on the steep slopes. Both elephant and giraffe avoided the steep slopes and their activity was higher during the wet season than during the dry season. Browsing damage on Acacia mellifera was lowest on the steep slopes. Elephant browsing damage was highest in the valley whereas giraffe browsing damage was highest on the plateau. Our findings suggest that fine-scale habitat heterogeneity is an important factor in predicting the distribution of large herbivores and their effects on vegetation and may interact with other drivers such as edaphic variations to influence local variation in vegetation structure and composition.

opencc-zeroAug 2020View details →
dryad36/100

Data from: Heat tolerance in ectotherms scales predictably with body size

<p><span><span><span><span><span><span><span><span><span><span><span>This study analyses how heat stress varies with body size in ectothermic organisms. The analytical approach is based on thermal death time (TDT) curves, which take into consideration both the intensity and the duration of a thermal stress, and result in a linear relationship between temperature and the logarithm of time. We analyzed two separate heat tolerance datasets measured in mollusk, arthropod, fish, amphibian and reptile species, covering nearly 9 orders of magnitude in size. Datasets ware intrinsically different but ultimately convey the same type of information on thermal tolerance. The first dataset comprised individual measurements of heat stress (i.e., data points expressed in temperature and time coordinates) whereas the second dataset described the intercept and slope of TDT curves. In both cases, smaller organisms exhibited a higher tolerance to an acute heat stress than larger ones, but their tolerance declined faster in time.We then combined the results from our scaling analyses with geographic information to quantify thermal safety margins standardized by mass and time. </span></span></span></span></span></span></span></span></span></span></span></p>

opencc-zeroAug 2020View details →
zenodo36/100

Supporting data for "A convolution method to assess subgrid-scale interactions between flow and patchy vegetation in biogeomorphic models"

<p>Dataset necessary to reproduce the results and analyses presented in the paper:</p> <p>Gourgue, O., van Belzen, J., Schwarz, C., Bouma, T.J., van de Koppel, J. &amp; Temmerman, S. (2020) A convolution method to assess subgrid-scale interactions between flow and patchy vegetation in biogeomorphic models, Journal of Advances in Modeling Earth Systems, submitted.</p> <p>The dataset contains:</p> <ul> <li>Process-based model simulations, including their input files and the Python scripts to generate them (pre-processing), as well as the output files and Python scripts to post-process them.</li> <li>Flume experiment data processed for the model calibration.</li> <li>Python scripts to generate the figures and tables of the manuscript.</li> </ul>

opencc-by-4.0Dec 2019View details →
dryad36/100

Functional groups of wild bees respond differently to faba bean (Vicia faba L.) cultivation at landscape scale

<p><span><b>1.</b>  Concerns about insect declines are growing and the provisioning of ecosystem services like pollination may be threatened. To safeguard biodiversity, greening measures were introduced within the reform of the EU's Common Agricultural Policy. One measure commonly applied by farmers is the cultivation of nitrogen fixing crops. Although underlying studies are largely missing, this measure is criticized as providing no significant biodiversity benefit.<b> </b></span></p> <p><span><b>2.</b>  Using a landscape-scale approach, we selected 30 paired study landscapes (1km x 1km) in Germany, i.e. 15 study landscapes with faba bean (FB) fields (<i>Vicia faba</i> L.) and 15 without any grain legumes. Flower-visiting wild bees were recorded with transect walks at the field margins of different crops using a stratified sampling approach. We analyzed the effect of FB cultivation and landscape composition on the abundance and species richness of wild bees as well as on the functional composition of the bee communities. </span></p> <p><span><b>3.</b>  Bumblebee densities (<i>Bombus</i> spp. Latreille) were more than twice as high in FB compared to control landscapes after the flowering of the beans. Non-<i>Bombus</i> wild bee densities, however, were not affected by FB cultivation, but were enhanced by increasing amounts of semi-natural habitats (SNH). </span></p> <p><span><b>4.</b>  After the beans` blooming had ceased, FB landscapes had a higher proportion of wild bees collecting pollen from Fabaceae than control landscapes. The community weighted means for bee size, measured as intertegular distance, were not affected by FB cultivation, but we found smaller species and species with shorter tongues with an increasing percentage of SNH. </span></p> <p><span><b>5.</b>  <i>Synthesis and applications</i>. The cultivation of faba bean (<i>V. faba </i>L.<i>)</i> strongly increased bumblebee densities throughout the season. This indicates that also on-field greening measures can support biodiversity. Nevertheless, since only functional groups adapted to faba bean benefit, measures to promote semi-natural habitats in agricultural landscapes need to be implemented. We conclude that the combination of on- and off-field measures is essential to maintain farmland biodiversity and the Common Agricultural Policy should furthermore promote both.</span></p>

opencc-zeroAug 2020View details →
dryad36/100

Data set for 'Lunge filter feeding biomechanics constrain rorqual foraging ecology across scale'...

<p>Fundamental scaling relationships influence the physiology of vital rates, which in turn shape the ecology and evolution of organisms. For diving mammals, benefits conferred by large body size include reduced transport costs and enhanced breath-holding capacity, thereby increasing overall foraging efficiency. Rorqual whales feed by engulfing a large mass of prey-laden water at high speed and filter it through baleen plates. However, as engulfment capacity increases with body length across species (Engulfment Volume ∝ Body Length <sup>3.57</sup>), the surface area of the baleen filter does not increase proportionally (Baleen Area ∝ Body Length<sup>1.82</sup>), and thus the filtration time of larger rorquals predictably increases because the baleen surface area must filter a disproportionally large amount of water. We predicted that filtration time should scale with body length to the power of 1.75 (Filter Time ∝ Body Length<sup>1.75</sup><i>)</i>. We tested this hypothesis on four rorqual species using multi-sensor tags with corresponding unoccupied aerial systems (UAS) -based body length estimates. We found that filter time scales with body length to the power of 1.79 (95% CI: 1.61 - 1.97). This result highlights a scale-dependent trade-off between engulfment capacity and baleen area that creates a biomechanical constraint to foraging through increased filtration time. Consequently, larger whales must target high density prey patches commensurate to the gulp size to meet their increased energetic demands. If these optimal patches are absent, larger rorquals may experience reduced foraging efficiency compared to smaller whales if they do not match engulfment capacity to the size of targeted prey aggregations.</p>

opencc-zeroAug 2020View details →
dryad36/100

Data from: Genome-wide diversity and habitat underlie fine-scale phenotypic differentiation in the rainbow darter (Etheostoma caeruleum)

<p>Adaptation to environmental change requires that populations harbor the necessary genetic variation to respond to selection. However, dispersal-limited species with fragmented populations and reduced genetic diversity may lack this variation and are at an increased risk of local extinction. In freshwater fish species, environmental change in the form of increased stream temperatures places many cold-water species at-risk. We present a study of rainbow darters (<i>Etheostoma caeruleum</i>) in which we evaluated the importance of genetic variation on adaptive potential and determined responses to extreme thermal stress. We compared fine-scale patterns of morphological and thermal tolerance differentiation across eight sites, including a unique lake habitat. We also inferred contemporary population structure using genomic data and characterized the relationship between individual genetic diversity and stress tolerance. We found site-specific variation in thermal tolerance that generally matched local conditions and morphological differences associated with lake-stream divergence. We detected patterns of population structure on a highly local spatial scale that could not be explained by isolation by distance or stream connectivity. Finally, we showed that individual thermal tolerance was positively correlated with genetic variation, suggesting that sites with increased genetic diversity may be better at tolerating novel stress. Our results highlight the importance of considering intraspecific variation in understanding population vulnerability and stress response.</p>

opencc-zeroAug 2020View details →
dryad36/100

Genomic differentiation and local adaptation on a microgeographic scale in a resident songbird

<p>Elucidating forces capable of driving species diversification in the face of gene flow remains a key goal in evolutionary biology. Song sparrows, Melospiza melodia, occur as 25 subspecies in diverse habitats across North America, are among the continent's most widespread vertebrate species, and are exemplary of many highly variable species for which the conservation of locally adapted populations may be critical to their range-wide persistence. We focus here on six morphologically distinct subspecies resident in the San Francisco Bay region, including three salt-marsh endemics and three residents in upland and riparian habitats adjacent to the Bay. We used reduced-representation sequencing to generate 2,773 SNPs to explore genetic differentiation, spatial population structure, and demographic history. Clustering separated individuals from each of the six subspecies, indicating subtle differentiation at microgeographic scales. Evidence of limited gene flow and low nucleotide diversity across all six subspecies further supports a hypothesis of isolation among locally adapted populations. We suggest that natural selection for genotypes adapted to salt marsh environments and changes in demography over the past century have acted in concert to drive the patterns of diversification reported here. Our results offer evidence of microgeographic specialization in a highly polytypic bird species long discussed as a model of sympatric speciation and rapid adaptation, and they support the hypothesis that conserving locally adapted populations may be critical to the range-wide persistence of similarly highly variable species.</p>

opencc-zeroDec 2019View details →
dryad36/100

Data from: Functional richness shows spatial scale dependency in Pheidole ant assemblages from Neotropical savannas

There is a growing recognition that spatial scale is important for understanding ecological processes shaping community membership, but empirical evidence on this topic is still scarce. Ecological processes such as environmental filtering can decrease functional differences among species and promote functional clustering of species assemblages, whereas interspecific competition can do the opposite. These different ecological processes are expected to take place at different spatial scales, with competition being more likely at finer scales and environmental filtering most likely at coarser scales. We used a comprehensive dataset on species assemblages of a dominant ant genus, Pheidole, in the Cerrado (savanna) biodiversity hotspot to ask how functional richness relate to species richness gradients and whether such relationships vary across spatial scales. Functional richness of Pheidole assemblages decreased with increasing species richness, but such relationship did not vary across different spatial scales. Species were more functionally dissimilar at finer spatial scales, and functional richness increased less than expected with increasing species richness. Our results indicate a tighter packing of the functional volume as richness increases and point out to a primary role for environmental filtering in shaping membership of Pheidole assemblages in Neotropical savannas.

opencc-zeroSep 2020View details →
dryad36/100

Data from: Multi-scale predictors of parasite risk in wild male savanna baboons (Papio cynocephalus)

Several factors are thought to shape male parasite risk in polygynous and polygynandrous mammals, including male-male competition, investment in potentially immunosuppressive hormones, and dispersal. Parasitism is also driven by processes occurring at larger scales, including host social groups and populations. To date, studies that test parasite-related costs of male behavior at all three scales—individual hosts, social groups, and the host population—remain rare. To fill this gap, we investigated multi-scale predictors of helminth parasitism in 97 male savanna baboons (Papio cynocephalus) living in the Amboseli ecosystem in Kenya over a five-year span. Controlling for multi-scale processes, we found that many of the classic indicators of male mating effort—high dominance rank, testosterone, and glucocorticoids—did not predict helminth infection risk. However, we identified two parasite-related costs associated with male behavior: (i) socially connected males exhibited higher Trichuris trichiura egg counts and greater parasite species richness than socially isolated males; and (ii) males with stable group residency exhibited higher parasite species richness than males who frequently dispersed to new social groups. At the population level, males harbored more parasites following periods of drought than rainfall. Lastly, parasites exhibited positive covariance suggesting that infection risk increases if a host already harbors one or more parasite taxa. These results indicate that multi-scale processes are important in driving male parasite risk, and that some aspects of male behavior are costly. Together, our results provide an unusually holistic perspective on the drivers of parasite risk in the context of male behaviors and life histories.

opencc-zeroSep 2020View details →
zenodo36/100

Experimental data for "Development of Experimental Techniques for Parameterization of Multi-scale Lithium-ion Battery Models"

<p>This dataset is for the validation data in&nbsp;Chen et al. (2020). It contains data for three different LG M50 cells undergoing an experiment in which the cells are charged in a constant-current/constant-voltage fashion and discharge at a constant current for different C-rates (C/10, C/2, 1C and 1.5C). Apart from the current and voltage, the temperatures of the cell surface and the thermal chamber in which they are cycled is recorded too.</p> <p><strong>References:</strong></p> <p>Chang-Hui Chen&nbsp;<em>et al</em>&nbsp;2020&nbsp;<em>J. Electrochem. Soc.</em>&nbsp;<strong>167</strong>&nbsp;080534 (<a href="https://doi.org/10.1149/1945-7111/ab9050">https://doi.org/10.1149/1945-7111/ab9050</a>)</p>

opencc-by-4.0May 2020View details →
dryad36/100

Mammal population densities at a global scale are higher in human-modified areas

Global landscapes are changing due to human activities with consequences for both biodiversity and ecosystems. For single species, terrestrial mammal population densities have shown mixed responses to human pressure, with both increasing and decreasing densities reported in the literature. How the impacts of human activities on mammal populations translates into altered global density patterns remains unclear. Here we aim to disentangle the effect of human impacts on large-scale patterns of mammal population densities using a global dataset of 6729 population density estimates for 468 mammal species (representing 59% and 44% of mammalian orders and families). We fitted a mixed effect model to explain the variation in density based on a 1-degree resolution as a function of the Human Footprint Index (HFI), a global proxy of direct and indirect human disturbances, while accounting for body mass, trophic level and primary productivity (Normalized Vegetation Index; NDVI). We found a significant positive relationship between population density and HFI, where population densities were higher in areas with a higher HFI (e.g., agricultural or suburban areas – no populations were located in very high HFI urban areas) compared to areas with a low HFI (e.g., wilderness areas). We also tested the effect of the individual components of the HFI and still found a consistent positive effect. The relationships remained positive even across populations of the same species, although variability among species was high. Our results indicate shifts in mammal population densities in human modified landscapes, which is due to the combined effect of species filtering, increased resources, and a possible reduction in competition and predation. Our study provides further evidence that macroecological patterns are being altered by human activities, where some species will benefit from these activities, while others will be negatively impacted or even extirpated.

opencc-zeroSep 2020View details →
dryad36/100

Data from: A tale of scale: plot but not neighbourhood tree diversity increases leaf litter ant diversity

1. Diversity of producers (e.g. plants) usually increases the diversity of associated organisms, but the scale (i.e. the spatial area of plant diversity considered) at which plant diversity acts on other taxa has rarely been studied. Most evidence for cross-taxon diversity relations come from aboveground consumers that directly interact with plants. 2. Experimental tests of plant diversity effects on elusive organisms inhabiting the leaf litter layer, which are important for nutrient cycling and decomposition, are rare. 3. Using a large tree diversity experiment, we tested whether tree diversity at the larger plot (i.e. community) or the smaller neighbourhood scale relates to the abundance, species richness, functional, and phylogenetic diversity of leaf litter ants, which are dominant organisms in brown food webs. 4. Contrary to our expectations of scale-independent positive tree diversity effects, ant diversity increased only with plot but not neighbourhood tree diversity. While the exact causal mechanisms are unclear, nest relocation or small-scale competition among ants may explain the stronger tree diversity effects at the plot scale. 5. Our results indicate that even for small and less mobile organisms in the leaf litter, effects of tree diversity are stronger at relatively larger scales. The finding emphasize the importance of diverse forest stands, in which mixing of tree species is not restricted to small patches, for supporting arthropod diversity in the leaf litter.

opencc-zeroSep 2020View details →
dryad36/100

Data from: Beta diversity patterns of bats in the Atlantic Forest: how does the scale of analysis affect the importance of spatial and environmental factors?

<p>Aim: Environmental and spatial factors are broadly recognized as important predictors of beta diversity patterns. However, the scale at which beta diversity patterns are evaluated will affect the outcoming results. For example, studies at larger scales will usually find spatial processes as the main predictor of beta diversity patterns. In this study we evaluate how beta diversity patterns change when analyses are conducted at different scales by reducing the scale of analysis in a hierarchical manner.</p> <p>Taxon: Chiroptera.</p> <p>Location: Atlantic Forest biome.</p> <p>Methods: Information on the occurrence of 59 bat species were obtained from the Atlantic Bats and Species Link database. We partitioned beta diversity into its two components (nestedness and turnover), and calculated these indexes hierarchically: the biome in its entirety (all ecoregions); between larger regions (north, central and south); and between ecoregions within each region. We performed a Generalized Dissimilarity Model (GDM) to identify and predict the turnover of bat species in the Atlantic Forest based on geo-climatic predictors. We obtained 19 geo-climatic data from AMBDATA, an environmental dataset based on different data sources commonly used in species distribution modeling.</p> <p>Results: We found that turnover was the main component influencing a latitudinal gradient when the biome was analysed in its entirety. However, when the scale of the analysis was reduced, we found that species loss (nestedness component) had a large effect in determining beta diversity dissimilarity. We also found that nestedness was the main pattern explaining beta diversity dissimilarity along a longitudinal gradient.</p> <p>Main conclusions: Beta diversity patterns changed with the scale of analysis, which indicates that bat species composition does not follow the same pattern throughout the Atlantic Forest. This corroborates the importance of analysing beta diversity patterns at different scales in order to understand how environmental dissimilarity across geographic space can influence species distribution patterns.</p>

opencc-zeroJul 2021View details →
dryad36/100

A large-scale systematic framework of Chinese snakes based on a unified multilocus marker system

Snakes are one of the most diverse groups of terrestrial vertebrates, with approximately 3500 extant species, some of which are closely related to human life. A robust phylogeny and taxonomy of snakes is crucial for us to know, study, protect and make use of them. For a large group such as snakes, cross-study data utilization is important which can be facilitated by standardization of the loci used for systematic analyses. In this study, we combined 5 mitochondrial markers, 19 vertebrate-universal nuclear protein coding (NPC) markers and 72 snake-specific noncoding intron markers, and generated a unified multilocus marker system for studies of snake systematics. This marker system is an addition to the squamate conserved locus set compiled for large-scale sequence capture experiments. We applied this marker system to over 440 snake samples and constructed the currently most comprehensive systematics framework of the snakes in China. Robust snake phylogenetic relationships were recovered at both deep and shallow evolutionary depths, demonstrating the usefulness of this multilocus marker system. Discordance was revealed by a parallel comparison between the snake tree based on our multilocus marker system and that based on only the mitochondrial loci, highlighting the necessity of using multiple marker types to better understand the snake evolutionary histories. The divergence times of different snake groups were estimated with the multilocus data set. Our comprehensive snake tree not only confirms many important nodes inferred in previous studies but also contributes new insights into the phylogenetic relationships among snakes. Suggestions are made for the current snake taxonomy.

opencc-zeroJun 2020View details →
dryad36/100

Detecting phylogenetic signal and adaptation in papionin cranial shape by decomposing variation at different spatial scales

<p>Phylogenetic reconstruction based on morphometric data is hampered by homoplasies. For example, many similarities in cranial form between primate taxa more strongly reflect ecological similarities rather than phylogenetic relatedness. However, the way in which the different cranial bones constitute cranial form is, if at all, of less functional relevance and thus largely hidden from selection. We propose that these "constructional details" are better indicators of phylogenetic history than any large-scale shape feature or raw form variable. Within a geometric morphometric context, we show how to analyze the relative extent of bones independently of differences in overall shape. We also show how to decompose total shape variation into small-scale and large-scale shape variation. We apply both methods to the midsagittal cranial morphology of papionin monkeys, which are well known for the discrepancy between morphological similarities and phylogenetic relationships. We study phylogenetic signal and functional adaptation using a molecular phylogeny and contextual data on feeding ecology and locomotor behavior. As expected, total cranial shape, bone outline shape, and large-scale shape features were only weakly associated with phylogenetic distance. But the relative bone contributions and small-scale shape features were both highly correlated with phylogenetic distances. By contrast, the association with ecological and behavioral variables was strongest for the outline shape and large-scale shape features. Studies of morphological adaptation and phylogenetic history thus profit from a decomposition of shape variation into different spatial scales.</p>

opencc-zeroOct 2020View details →
dryad36/100

Foraging in nature: contrasting responses to resource heterogeneity at small and large spatial scales.

<p>A key problem faced by foragers is how to forage when resources are distributed heterogeneously in space. This heterogeneity and associated trade-offs may change with spatial scale. Furthermore, foragers may also have to optimize acquiring multiple resources. Such complexity of decision-making while foraging is poorly understood. We studied the butterfly <i>Ypthima huebneri</i> to examine how foraging decisions of adults are influenced by spatial scale and multiple resources. We predicted that, at a small-spatial scale, the time spent foraging in a patch should be proportional to resources in the patch, but at large-spatial scales, due to limitations arising from large travel costs, this relationship should turn negative. We also predicted that both adult and larval resources should jointly affect foraging butterflies. To test these predictions, we laid eleven plots, and sub-divided them into patches. We mapped nectar and larval resources and measured butterfly behavior in these patches and plots. We found that adult foraging behavior showed contrasting relationships with adult resource density at small versus large-spatial scales. At the smaller-spatial scale, butterflies spent more time feeding in resource-rich patches, whereas at the large-scale, butterflies spent more time feeding in resource-poor plots. Furthermore, both adult and larval resources appeared to affect foraging decisions, suggesting that individuals may optimize search costs for different resources. Overall, our findings suggest that the variation in foraging behavior seen in foragers might result from animals responding to complex ecological conditions, such as, resource heterogeneity at multiple spatial scales and the challenges of tracking multiple resources.</p>

opencc-zeroSep 2020View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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Your academic CV and NIH biosketch

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