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Fig. 4 in Geographical versus ecological isolation of closely related black flies (Diptera: Simuliidae) inferred from phylogeny, geography, and ecology
Fig. 4 PCA of stream variables for two species in Clade I-3 of subgenus Gomphostilbia in Thailand. Factor score 1 (PC-1) explained 38.36 % of the total variation and was related positively to stream width, depth, velocity, and conductivity. Factor score 2 (PC-2) explained 29.41 % of the total variation and was related positively to water conductivity and pH. The two taxa of this clade were not separated in environmental space
Fig. 1 in Geographical versus ecological isolation of closely related black flies (Diptera: Simuliidae) inferred from phylogeny, geography, and ecology
Fig. 1 Maximum parsimony tree for Gomphostilbia in Thailand, based on combined dataset of the cytochrome oxidase I, cytochrome oxidase II, and 18 S rRNA/ITS1 sequences. Bootstrap values for
Fig. 3 in Geographical versus ecological isolation of closely related black flies (Diptera: Simuliidae) inferred from phylogeny, geography, and ecology
Fig. 3 PCA of stream variables for two species in Clade I-2 of subgenus Gomphostilbia in Thailand. Factor score 1 (PC-1) explained 49.49 % of the total variation and was positively related to water conductivity and pH. Factor score 2 (PC-2) explained 24.80 % of the total variation and was positively related to stream depth and negatively to altitude. The two taxa of this clade were not separated in environmental space
Fig. 7 in A new rodent species of the genus Mus (Rodentia: Muridae) confirms the biogeographical uniqueness of the isolated forests of southern Ethiopia
Fig. 7 Variation in three external body measurements displayed by violin plots. Values of type specimens are shown right to the violins. The central white dots indicate medians, black bars show interquartile range. Grey asterisks indicate values of the specimen of M. sp. "Harenna" from the Chingawa forest
Fig. 9 in A new rodent species of the genus Mus (Rodentia: Muridae) confirms the biogeographical uniqueness of the isolated forests of southern Ethiopia
Fig. 9 Dorsal (above), ventral (middle) and lateral (below) views of African Mus skulls. (A) Mus harennensis sp. nov. ZMMU S-164895 (holotype), (B) M. harennensis sp. nov. ZMMU S-164896 (paratype), (C) M. triton IVB T8× 465, (D) M. mahomet ZMMU S-165171 and (E) M. proconodon ZMMU S-165996. The longitudinal scale is divided into millimetres
Fig. 4 in A new rodent species of the genus Mus (Rodentia: Muridae) confirms the biogeographical uniqueness of the isolated forests of southern Ethiopia
Fig. 4 Time calibrated species tree of Mus (subgenus Nannomys) based on mitochondrial CYTB and four nuclear loci. Node labels show divergence times in Ma (million years before present), posterior probabilities are indicated by colours
Fig. 2 in A new rodent species of the genus Mus (Rodentia: Muridae) confirms the biogeographical uniqueness of the isolated forests of southern Ethiopia
Fig. 2 Phylogenetic tree based on mitochondrial CYTB gene with mPTP partitioning into five lineages. Branch labels show posterior probabilities
Fig. 5 Between-group principal components separating M in A new rodent species of the genus Mus (Rodentia: Muridae) confirms the biogeographical uniqueness of the isolated forests of southern Ethiopia
Fig. 5 Between-group principal components separating M. sp. "Harenna", M. triton and M. mahomet. Large filled points are species means, small open points are individuals, type specimens are marked by asterisks. The two misclassified specimens of M. sp. "Harenna" and one of M. triton misclassified are those with the lowest bgPC1 scores in their respective species. The label "Chingawa" marks the specimen of M. sp. "Harenna" from this forest
Fig. 8 in A new rodent species of the genus Mus (Rodentia: Muridae) confirms the biogeographical uniqueness of the isolated forests of southern Ethiopia
Fig. 8 Dorsal (above) and ventral (below) views of Ethiopian Mus skins. (A) M. harennensis sp. nov. ZMMU S-164895 (holotype), (B) M. harennensis sp. nov. ZMMU S-164896 (paratype), (C) M. mahomet ZMMU S-165171 and (D) M. proconodon ZMMU S-165996
FIGURE 2. Trichoderma changiae A–C. Colonies after 7 d in Trichoderma changiae (Hypocreales), a new species isolated from a native orchid in Taiwan
FIGURE 2. Trichoderma changiae A–C. Colonies after 7 d at 25 °C, overview on: PDA (A), CMA (B), SNA (C). D–M. Conidiophores, phialides, and conidia. N–O. Clamydospores. P. Conidia. Sources: A–E, G–H, N–P from BCRC 24F0002; F, I–M from BCRC 24F0007. Scale bar = 10 µm. Photographs by Y.-H. Wei.
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 in Trichoderma changiae (Hypocreales), a new species isolated from a native orchid in Taiwan
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 sequences using Maximum-likelihood analysis. The new species Trichoderma changiae is highlighted in bold blue. Bootstrap values above 50% from RAxML-HPC2 on XSEDE (left) and posterior probabilities above 0.95 from Bayesian analysis (right) are displayed at the nodes. The scale bar represents 0.05 substitutions per nucleotide position. Trichoderma vulgatum was used as the outgroup. "T" denotes type strains.
FIGURE 4 in Multi-locus phylogeny and morphology of Curvularia isolates associated with leaf spots of corn in northern Algeria unveiled two new species, C. algeriensis sp. nov. and C. boudouaouensis sp. nov., with a new record for C. spicifera
FIGURE 4. Curvularia spicifera (AT-102). a 7-day-old colony on PDA. b symptoms on inoculated corn leaf. c conidiophores with attached conidia on PDA. d–f conidiophores on PDA. g conidia on the host. h, i: germinating conidia on water agar. Scale bars = c–g: 25 µm; h, i: 10 µm.
FIGURE 2 in Multi-locus phylogeny and morphology of Curvularia isolates associated with leaf spots of corn in northern Algeria unveiled two new species, C. algeriensis sp. nov. and C. boudouaouensis sp. nov., with a new record for C. spicifera
FIGURE 2. Curvularia algeriensis (CBS 150506). a 7-day-old colony on PDA. b lesions on inoculated corn leaf. c conidiophores and conidia on the host. d conidiophores with attached conidia on PDA. e conidia on PDA. f chlamydospores. Scale bars = 25 µm.
FIGURE 3 in Multi-locus phylogeny and morphology of Curvularia isolates associated with leaf spots of corn in northern Algeria unveiled two new species, C. algeriensis sp. nov. and C. boudouaouensis sp. nov., with a new record for C. spicifera
FIGURE 3. Curvularia boudouaouensis (CBS 150515). a 7-day-old colony on PDA. b lesions on inoculated corn leaf. c, d conidiophores with attached conidia. e conidia. f chlamydospores. Scale bars = 25 µm.
FIGURE 1 in Multi-locus phylogeny and morphology of Curvularia isolates associated with leaf spots of corn in northern Algeria unveiled two new species, C. algeriensis sp. nov. and C. boudouaouensis sp. nov., with a new record for C. spicifera
FIGURE 1. Phylogenetic tree generated from maximum likelihood (ML) analysis of the combined ITS, GAPDH and TEF1 sequence data of Curvularia species. ML bootstrap support values (BS) ≥ 70% and Bayesian posterior probabilities (PP) ≥ 0.95 are shown near the nodes. The novelties from Algeria are in red and bold and the new record is in bold. The tree is rooted with Bipolaris maydis CBS 136.29 and Exserohilum turcicum CBS 690.71.
FIGURE 2 in Biscogniauxia dicranopteridis sp. nov. and B. petrensis isolated from Dicranopteris dichotoma in China
FIGURE 2. Biscogniauxia dicranopteridis (HKAS 124928, Holotype) a Culture on PDA from above and below. b Culture on WA from above and below. c Colonies on WA. d, e Conidiophores with conidiogenous cells and conidia. f–i Conidiogenous cells. j–n Conidia. Scale bar: d = 100 μm, e = 50 μm, f–i = 20 μm, j =10 μm, k–n = 5 μm.
FIGURE 3 in Biscogniauxia dicranopteridis sp. nov. and B. petrensis isolated from Dicranopteris dichotoma in China
FIGURE 3. Biscogniauxia petrensis (HKAS 124929, new host record) a Culture on PDA from above and below. b Culture on WA from above and below. c Colonies on WA. d, e Conidiophores with conidiogenous cells and conidia. f–h Conidiogenous cells. i, j conidia. k pigmentation. Scale bars: d = 50 μm, e–i = 20 μm, j = 10 μm, k = 50 μm.
FIGURE 5 in Two new endophytic fungi of Colletotrichum and Diaporthe isolated from Berchemia polyphylla var. leioclada in Guizhou Province, China
FIGURE 5. Phylogenetic tree based on RAxML analyses of a combined ITS, TUB2, CAL, HIS, TEF1-α dataset, including sequences of our strain and a selection of related Diaporthe spp., restricted according to the phylogenetic study of Supplementary Material (Figure S2). Diaporthe caulivora (CBS 127268) was used as the outgroup. The combined gene analysis included 13 strains with 2409 characters after aligned, including gaps (ITS: 560bp, TUB2: 526bp, CAL: 506bp, HIS3: 494bp, TEF1-α: 323bp). The RAxML analysis of the combined dataset yielded the best scoring tree with a final ML optimization likelihood value of -7651.550919. The matrix had 572 distinct alignment patterns, with 23.26% undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.203920, C = 0.334775, G = 0.247441, T = 0.213864; substitution rates AC = 1.486536, AG = 3.694646, AT = 1.459400, CG = 1.231075, CT = 5.843934, GT = 1.000000; gamma distribution shape parameter α = 0.257986. Bootstrap support values for RAxML equal to or greater than 70% and Bayesian posterior probabilities equal to or greater than 0.90 are given at each node. The new isolate is shown in red and bold.
FIGURE 4 in Two new endophytic fungi of Colletotrichum and Diaporthe isolated from Berchemia polyphylla var. leioclada in Guizhou Province, China
FIGURE 4. Diaporthe berchemiae (ex-type culture, GMBCC 20000). a, b Front and reverse colony on MEA. c, d Conidiomata on PDA. e–g Conidiophores. h–k Conidiogenous cells and conidia. l–o Alpha conidia. p-s Beta conidia. Scale bars: e–g, i–k = 10 μm; h, l–s = 5 μm.
FIGURE 2 in Two new endophytic fungi of Colletotrichum and Diaporthe isolated from Berchemia polyphylla var. leioclada in Guizhou Province, China
FIGURE 2. Phylogenetic tree of Maximum Likelihood analyses of Colletotrichum gloeosporioides species complex and its closely related species (including sequences of our strain and a selection of related Colletotrichum spp.,), restricted according to the phylogenetic study of Supplementary Material (Figure S1). Colletotrichum hippeastri (CBS 125376) and C. boninense CBS 123755 were used as outgroup taxa. The tree was built using concatenated sequences of ITS, ACT, CHS-1, GADPH, and TUB2 datasets and the tree topology of the RAxML and Bayesian analyses are similar. The combined gene analysis included 86 strains with 2152 characters after aligned, including gaps (ITS: 593bp, ACT: 282bp, CHS-1: 299bp, GADPH: 277bp, and TUB2: 701bp). The RAxML analysis of the combined dataset yielded the best scoring tree with a final ML optimization likelihood value of -15857.131621. The matrix had 1198 distinct alignment patterns, with 23.12% undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.229650, C = 0.299082, G = 0.241413, T = 0.229855; substitution rates AC = 1.009331, AG = 2.892663, AT = 1.227390, CG = 0.965860, CT = 4.527049, GT = 1.000000; gamma distribution shape parameter α = 0.449663. Bootstrap support values for RAxML equal to or greater than 70% and Bayesian posterior probabilities equal to or greater than 0.90 are given at each node. The new isolate is shown in red and bold.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.