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Figure 1. - Bayesian phylogeny of Euptychia based on one mitochondrial (COI) and one nuclear (EF1-a) gene. Posterior probabilities are listed above and bootstrap values below branches. A dash denotes bootstrap support lower than 50%. (Euptychiaattenboroughi is not included in the analysis – see text for details.)
Figure 1. - Bayesian phylogeny of Euptychia based on one mitochondrial (COI) and one nuclear (EF1-a) gene. Posterior probabilities are listed above and bootstrap values below branches. A dash denotes bootstrap support lower than 50%. (Euptychiaattenboroughi is not included in the analysis – see text for details.)
Supplementary material 3: List of tested and analyzed data sharing tools (non-exhaustive) from: Data sharing tools adopted by the European Biodiversity Observation Network Project - Research Ideas and Outcomes 2: e9390 (31 May 2016) https://doi.org/10.3897/rio.2.e9390
List of tested and analyzed data sharing tools (non-exhaustive)
Supplementary material 1: List of selected tools. from: Data sharing tools adopted by the European Biodiversity Observation Network Project - Research Ideas and Outcomes 2: e9390 (31 May 2016) https://doi.org/10.3897/rio.2.e9390
List of selected tools.
Replication package for How the R Community Creates and Curates Knowledge: An Extended Study of Stack Overflow and Mailing Lists
<p>This dataset was used in the paper: "How the R Community Creates and Curates Knowledge: An Extended Study of Stack Overflow and Mailing Lists", Journal of Empirical Software Engineering, to appear.</p>
A list of alien taxa for South Africa
<p>Zengeya TA, Faulkner KT, Mtileni MP, Fernández Winzer L, Kumschick S, McCulloch-Jones EJ, Miza-Tshangana SA, Robinson TB, Sifuba A, Engelbrecht W, van Wilgen BW, Wilson JRU (preprint) A checklist of alien taxa for South Africa. bioRxiv: 2025.2005.2022.655507. doi:10.1101/2025.05.22.655507</p> <p>This is an updated version of SANBI and CIB 2023. Appendix 2 to "The Status of Biological Invasions and their Management in South Africa in 2022"—The species list. South African National Biodiversity Institute, Kirstenbosch and DSI-NRF Centre of Excellence for Invasion Biology, Stellenbosch. http://dx.doi.org/10.5281/zenodo.8217197</p> <p>For more details see: http://iasreport.sanbi.org.za</p> <p>For the report itself see: http://dx.doi.org/10.5281/zenodo.8217182</p> <p>For a list of the references used (for v20250520) see: http://dx.doi.org/10.5281/zenodo.17185376</p> <p>The South African Department of Forestry, Fisheries and the Environment (DFFE) are thanked for funding noting that this dataset does not necessarily represent the views or opinions of DFFE or its employees</p>
S96 | ECIPFAS | Updatable List to add PFAS Structures to Public Resources from ECI (UniLu)
<p>This is the collection associated with list S96 ECIPFAS Updatable List to add PFAS Structures to Public Resources from ECI (UniLu) on the NORMAN Suspect List Exchange.</p> <p><a href="https://www.norman-network.com/nds/SLE/">https://www.norman-network.com/nds/SLE/</a></p> <p>This dataset is for users to contribute PFAS from the literature or other documents to the NORMAN SLE, SusDat and PubChem. Note that the role of this list is to enable the addition of new PFAS into databases and is not intended to be a comprehensive PFAS listing. The start of this collection was all PFAS entries in the S74_REFTPS dataset, which includes also legacy PFAS.</p> <p>Update 29/3/2022: Added Munoz et al data. 1/4/2022: added CIDs for new entries from 29/3. Update 03/05/2022 added new entries. 18/12: updated existing entries, corrected CID 163201609 => 166001338. Update 06/09/2025: added new entries from Jonathan Zweigle; 10/09/2025 added new CIDs.</p>
Repacked ExoMol Opacity Line Lists
<p>Repacked ExoMol Opacity Line Lists using the REPACK code (<a href="https://ui.adsabs.harvard.edu/abs/2017ApJ...850...32C">Cubillos 2017, ApJ, 850</a>)</p> <p>Version 3:</p> <ul> <li>Updated C2H4, CH4, NH3, VO line lists.</li> <li>Replaced CO2 Exomol linelist with Ames list.</li> <li>Added H2S, OCS, KOH, SiH4 line lists.</li> </ul> <p>See also part 2 for the PH3 line list: <a href="https://zenodo.org/records/17167393">https://zenodo.org/records/17167393</a></p>
Gendered Author List International Plant Names Index 2023
<p>Included to provide a reference for a WikiData editor to add this information to all IPNI id's in WIkiData so that it is maintained by the community and more reusable. <br>The data has been largely updated for publication of <i>2023</i> Making the taxonomic effort: acknowledging female role models in botanical and mycological taxonomy. The Linnean Special Issue 10: 44-59. and for an upcoming paper: Creating a multi-linked dynamic dataset: a case study of plant genera named for women. Biodiversity Data Journal. However, it will not contain names entered after about 2020 since the paper was in submission for a few years due to Covid.</p>
Data from: Latest Ordovician (Hirnantian) brachiopod faunal lists used for non-matric multidimensional scaling (NMDS) and network analyses
<p><span>A total of 107 brachiopod genera of Hirnantian age among 42 localities worldwide are compiled into a binary dataset (Table S1; presence =1, absence = 0). The majority of the faunal lists was derived from the well-screened Hirnantian brachiopod faunal data of Rong et al. (2020). In this study, the Hirnantian faunal lists are updated for the following localities: </span><span>Anticosti Island, eastern Canada; </span><span>Edgewood region, American Mid-Continent; </span><span>Mackenzie Mountains, northwestern Canada. D</span><span>etailed discussions on these faunal update and references are provided in the main paper (section on Paleobiogeography of the Mackenzie Mountains Hirnantian fauna). </span></p>
List of Talpidae from the Late Miocene of Slovakia, and measurements of the lower molars of Desmanella rietscheli from Dorn-Dürkheim
<p>Central Europe is an area of high diversity for the Talpidae (Eulipotyphla, Mammalia) during the Late Miocene. The assemblages from Slovakia (Borský Svätý Jur, Krásno, Pezinok, Šalgovce, Studienka, Triblavina) are no exception with their abundant material representing eleven species. The uropsiline <em>Desmanella </em>is represented by <em>D</em>. <em>rietscheli</em> and <em>D. dubia</em>. Desmanini fossils are attributed to <em>Archaeodesmana vinea</em>, <em>Archaeodesmana</em> <em>dissona </em>nov. sp., <em>Gerhardstorchia biradicata</em> and <em>Gerhardstorchia</em> sp. The scalopine <em>Proscapanus minor </em>and <em>P. austriacus</em> are well recorded in the Vallesian localities and support the emergence of <em>P. austriacus</em> before the MN9/10 transition.<em> </em>Talpini and Urotrichini are especially rare and only represented by <em>Talpa </em>cf. <em>minuta </em>and Urotrichini gen. sp. indet. Finally, we identified in the MN9 locality of Borský Svätý Jur the youngest occurrence of <em>Desmanodon</em> in Europe with <em>D.</em> cf. <em>fluegeli</em>. The high Late Miocene central European diversity is partly explained by the co-occurence of the competing Scalopini and Talpini during the Vallesian, indicating high-resources environments. The decline of these tribes, followed by the success of the desmans during the Turolian, appears as a consequence of regional environmental changes.</p>
List of references used in the bibliometric analysis of Chapter 2 - History of Research About the Tropical Brazilian Coral Reef Systems - Book: Brazilian Coral Reefs
<p>This list contains 755 references related to coral reefs research. This list was obtained through a search for articles and book chapters in the databases Web of Science and Scopus, using the terms "reef" and "Brazil" in Title, Abstract and Keywords, added to references included from the authors own databases. The search was made in February, 12th 2021.</p>
Suspect List of Prymnesium parvum
<p>This list contains metabolites identified in the haptophyte Prymnesium parvum, together with a classification sunburst plot, depciting chemical classification based on ChemONT ontology. The most prevalent superclasses in this suspect list are: Organic acids and derivatives (26.2%), Lipids and lipid-like molecules (23.8%), Organic oxygen compounds (20.3%), and Nucleosides, nucleotides, and analogues (19.8 %).</p>
3D Scan - The Grange, Grade II Listed Room
The Grange - Hospital Conversion into Luxury apartments. Here is a point cloud scan completed by Virtually Built Ltd, this model documents a single room which was professionaly restored. Source: Objaverse 1.0 / Sketchfab
The Sumerian King List
This is a 3D model of "The Sumerian King List" (Weld-Blundell-Prism) displayed at the Ashmoleon Museum in Oxford. "The Sumerian King List" is a prism made of baked clay, showing cuneiform inscriptions. These inscriptions are listing the former Sumerian rulers in the region of todays southern Iraq. They start in a mythical past (antediluvian or pre-flood times) and end in the time it was written (Sin-magir of the Isin dynasty). Dating: Mesopotamian Middle Bronze Age, c. 1827-1817 BC Source: Objaverse 1.0 / Sketchfab
DATASET. LIST OF JOURNAL ARTICLES AND BOOK CHAPTERS THAT DEALT WITH MEDIA REPRESENTATIONS OF FEMICIDE.
<p><span>The dataset contains the list of 213 </span><span>journal articles and book chapters that deal with media empirical evidence on femicide, available in <span>Scopus, Web of Science (WoS), and EBSCOhost.</span> The dataset includes three sheets in one file, the first contains a list of the 213 documents available in the three databases including their bibliographic information, general description, and keywords describing the main results. The second sheet contains the codes for variables, and the third sheet contains the list of a subgroup of articles available in <span>Scopus and Web of Science (WoS)</span>. </span></p>
The global distribution of plants used by humans datasets: list of utilised species, occurrence data and model outputs at 10 arc-minutes spatial resolution
<p>Datasets and model outputs used to map the global distribution of utilised plants by humans. The folder is composed of two subfolders <em>raw_data</em> and <em>processed_data</em> containing respectively the list of utilised plant species modelled -<em>utilised_plants_species_list.csv</em>-, and their occurrence data -<em>occurrence_data.zip-</em> and predicted distribution -<em>species_proba_per_cell.rds-.</em></p> <p> </p> <ul> <li>The file <em>utilised_plants_species_list.csv</em> in the <em>raw_data</em> folder contains a<strong> </strong>list of 35687 plant species (and hybrids) used by humans and 10 plant use categories with the following 14 fields:</li> </ul> <p><strong>plant_ID:<em> </em></strong>plant identifier number ranging from between 1-35687</p> <p><strong>binomial_acc_name:</strong> binomial accepted name of the plant species</p> <p><strong>author_acc_name</strong>: name of the author(s)</p> <p><strong>is_hybrid:</strong> logical TRUE or FALSE indicating whether the species is an hybrid or not.</p> <p><strong>AnimalFood:</strong> forage and fodder for vertebrate animals only.</p> <p><strong>EnvironmentalUses:</strong> examples include intercrops and nurse crops, ornamentals, barrier hedges, shade plants, windbreaks, soil improvers, plants for revegetation and erosion control, wastewater purifiers, indicators of the presence of metals, pollution, or underground water.</p> <p><strong>Fuels:</strong> charcoal, petroleum substitutes, fuel alcohols, etc. Given the importance of energy plants for people, those were distinguished from Materials.</p> <p><strong>GeneSources:</strong> wild relatives of major crops which may possess traits associated with biotic or abiotic resistance and may be valuable for breeding programs.</p> <p><strong>HumanFood:</strong> food for humans only, including beverages and food additives.</p> <p><strong>InvertebrateFood:</strong> plants consumed by invertebrates used by humans, such as bees, silkworms, lac insects and edible grubs.</p> <p><strong>Materials:</strong> woods, fibers, cork, cane, tannins, latex, resins, gums, waxes, oils, lipids, etc. and their derived products.</p> <p><strong>Medicines:</strong> both human and veterinary.</p> <p><strong>Poisons:</strong> plants which are poisonous to both vertebrates and invertebrates, both accidentally and intentionally, e.g., for hunting and fishing, molluscicides, herbicides, insecticides.</p> <p><strong>SocialsUses:</strong> plants used for social purposes, which cannot be defined as food or medicine, for instance, masticatories, smoking materials, narcotics, hallucinogens and psychoactive drugs, and plants with ritual or religious significance.</p> <p><strong>Totals:</strong> total number of uses recorded for a species</p> <p> </p> <ul> <li>The zipfile <em>occurrence_data.zip</em> in the <em>processed_data</em> folder contains 35687 Comma Separated Values (CSV) files, one for each species, containing curated geographic occurrence records used to build species distribution models with the following 14 fields:</li> </ul> <p><strong>Species:</strong> the binomial accepted name of the species</p> <p><strong>Fullname:</strong> same as species</p> <p><strong>decimalLongitude:</strong> the geographic longitude of the occurrence records of the species in decimal degrees</p> <p><strong>decimalLatitude:</strong> the geographic latitude of the occurrence records of the species in decimal degrees</p> <p><strong>countryCode:</strong> a three-letter standard abbreviation for the country of the occurrence locality</p> <p><strong>coordinateUncertaintyinMeters</strong>: indicator for the accuracy of the coordinate location, described as the radius of a circle around the stated point location</p> <p><strong>year:</strong> year of the observation of the occurrence record of the species</p> <p><strong>individualCount:</strong> the number of individuals present at the time of the observation</p> <p><strong>gbifID:</strong> unique identifier number for the occurrence from the original database</p> <p><strong>basisOfRecords:</strong> the type of the individual record, e.g. observation, physical specimen, fossil, living ex-situ, culture collection specimen</p> <p><strong>institutionCode</strong>: the name of the institution or organization listed as the data publisher on GBIF</p> <p><strong>establishmentMeans:</strong> statement about whether an organism has been introduced to a given place and time through the direct or indirect activity of modern humans</p> <p><strong>is_cultivated_observation:</strong> whether or not an organism is cultivated</p> <p><strong>sourceID:</strong> name of the source database</p> <p> </p> <ul> <li>The file <em>species_proba_per_cell.rds</em> in the <em>processed_data</em> folder is<em> a R Data Serialization </em>(RDS) file containing a data.table object with the following 3 fields:</li> </ul> <p><strong>plant_ID:</strong><em> </em>plant identifier number ranging from between 1-35687</p> <p><strong>proba:</strong> species occurrence probability</p> <p><strong>cell:</strong><em> </em>raster grid cell number between 1-2251762</p> <p>This object can be used in combination with a raster layer to reconstruct the modelled distribution of each species or retrieve species richness and endemism.</p>
Appendix 7 to "The Status of Biological Invasions and their Management in South Africa in 2022"—The Species List for the Prince Edward Islands
<p>SANBI and CIB 2023. Appendix 7 to "The Status of Biological Invasions and their Management in South Africa in 2022"—The Species List for the Prince Edward Islands. South African National Biodiversity Institute, Kirstenbosch and DSI-NRF Centre of Excellence for Invasion Biology, Stellenbosch. http://dx.doi.org/10.5281/zenodo.8217229</p> <p> </p> <p>For more details see: http://iasreport.sanbi.org.za<br> For the report itself see: http://dx.doi.org/10.5281/zenodo.8217182</p>
List of academic journals
<p>List of 48 academic journals published by national institutions included in the study. </p>
List of material examined from the Ipomoea survey in the state of Paraíba
<p>Este arquivo contém a relação de materiais examinados para o estudo do levantamento de <em>Ipomoea</em> L. no estado da Paraíba, considerando que apenas o material selecionado foi citado no corpo do manuscrito, pois a lista é bastante extensa.</p>
List of charge transport low molecular weight compound geometry files
<p>The dataset comprises geometry files for low molecular weight compounds related to electron transport and hole transport. These files store information about atoms and bonds. The optimization of molecular geometry is performed using Avogadro software. These molecular structural files can subsequently be utilized to calculate energy levels for molecules, for instance, using Gaussian software.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.