Find research datasets worth reusing

opencc-zeroDec 2014View details →

Data from: Plant-soil feedbacks shift from negative to positive with decreasing light in forest understory species

Net pairwise plant–soil feedbacks (PSF) may be an important factor structuring plant communities, yet the influence of abiotic context on PSF is not yet understood. Abiotic factors such as light availability can alter plant–soil interactions, potentially resulting in strong context dependence of PSF. Here, we present an experiment in which we measured whole-soil net pairwise feedbacks amongst six common forest understory species across a gradient of light availability. Light treatments were imposed throughout both phases (the conditioning phase and the response phase) of the feedback experiment. Across the plant community, PSF shifted from negative at high light availability to weakly positive under low light (P = 0.013). Differences in the biomass of plants during the conditioning phase did not fully explain light-imposed differences in feedbacks, indicating that reduced light availability qualitatively changes the nature of PSF rather than simply weakening feedbacks by reducing plant growth. Results indicate that abiotic context can fundamentally alter the role of PSF in structuring plant communities.

Data from: A new species of Telipogon (Orchidaceae) from Mexico and its phylogenetic position among Mesoamerican species

Telipogon is a Neotropical genus with approximately 200 species, the majority are epiphytes and distributed in South America; Mexico is the northernmost most area of distribution with only two recorded species. Here we describe a third species, T. corticatus Amezcua-Trigos and Sosa, collected in cloud forests of eastern Mexico, in Veracruz. It is a species solely growing in mossy patches in the exfoliating bark of trees of the Juglandaceae species, Oreomunnea mexicana. Reddish-brown flowers, large sepals close to each other in the open flower, two thirds of the length of the lip, petals elliptic, large auricles of column with long hairs and wide apex, a sagittate lip separated from the column with a base with a marked sinus, and a curved anther are diagnostic characters for this species. Phylogenetic position of T. corticatus along with Mesoamerican species was identified based in ITS and in the plastid matK, atpB-rbcL DNA markers considering representative taxa in subtribe Oncidiinae that Telipogon belongs. Telipogon corticatus along with the Mesoamerican T. helleri and T. cobanenis were retrieved as closely related, and associated to clades consisting of Central American species.

opencc-zeroDec 2016View details →

Data from: Comparative landscape genetics of pond-breeding amphibians in Mediterranean temporal wetlands: the positive role of structural heterogeneity in promoting gene flow

Comparative landscape genetics studies can provide key information to implement cost-effective conservation measures favoring a broad set of taxa. These studies are scarce, particularly in Mediterranean areas, which include diverse but threatened biological communities. Here we focus on Mediterranean wetlands in central Iberia and perform a multi-level, comparative study of two endemic pond-breeding amphibians, a salamander (Pleurodeles waltl) and a toad (Pelobates cultripes). We genotyped 411 salamanders from 20 populations and 306 toads from 16 populations at 18 and 16 microsatellite loci, respectively, and identified major factors associated with population connectivity through the analysis of three sets of variables potentially affecting gene flow at increasingly finer levels of spatial resolution. Topographic, land use/cover, and remotely sensed vegetation/moisture indices were used to derive optimized resistance surfaces for the two species. We found contrasting patterns of genetic structure, with stronger, finer-scale genetic differentiation in Pleurodeles waltl, and notable differences in the role of fine-scale patterns of heterogeneity in vegetation cover and water content in shaping patterns of regional genetic structure in the two species. Overall, our results suggest a positive role of structural heterogeneity in population connectivity in pond-breeding amphibians, with habitat patches of Mediterranean scrubland and open oak woodlands ("dehesas") facilitating gene flow. Our study highlights the usefulness of remotely sensed continuous variables of land cover, vegetation and water content (e.g., NDVI, NDMI) in conservation-oriented studies aimed at identifying major drivers of population connectivity.

opencc-zeroDec 2018View details →

Data from: Nineteen years of consistently positive and strong female mate preferences despite individual variation

Sexual selection driven by mate choice has generated some of the most astounding diversity in nature, suggesting population-level preferences should be strong and consistent over many generations. On the other hand, mating preferences are among the least repeatable components of an individual animal's phenotype, suggesting low consistency across an animal's lifetime. Despite decades of intensive study of sexual selection there is almost no information about the strength and consistency of preferences across many years. In this study we present the results of over 5000 mate choice tests with a species of wild frog conducted over 19 consecutive years. Results show that preferences are positive and strong and vary little across years. This consistency is despite the fact that there are substantial differences among females in their strength of preference. We also suggest mate preferences in populations that are primarily the result of sensory exploitation might be more stable over time compared to preferences that are primarily involved in assessing male quality.

Data from: Higher rates of pre‐breeding condition gain positively impacts clutch size: a mechanistic test of the condition‐dependent individual optimization model

1. A combination of timing of and body condition (i.e., mass) at arrival on the breeding grounds interact to influence the optimal combination of the timing of reproduction and clutch size in migratory species. This relationship has been formalized by Rowe et al. in a condition-dependent individual optimization model (American Naturalist, 1994, 143, 689-722), which has been empirically tested and validated in avian species with a capital-based breeding strategy. 2. This model makes a key, but currently untested prediction; that variation in the rate of body condition gain will shift the optimal combination of laying date and clutch size. This prediction is essential because it implies that individuals can compensate for the challenges associated with late timing of arrival or poor body condition at arrival on the breeding grounds through adjustment of their life history investment decisions, in an attempt to maximize fitness. 3. Using an 11-year data set in arctic-nesting common eiders (Somateria mollissima), quantification of fattening rates using plasma triglycerides (an energetic metabolite), and a path analysis approach, we test this prediction of this optimization model; controlling for arrival date and body condition, females that fatten more quickly will adjust the optimal combination of lay date and clutch size, in favour of a larger clutch size. 4. As predicted, females fattening at higher rates initiated clutches earlier and produced larger clutch sizes, indicating that fattening rate is an important factor in addition to arrival date and body condition in predicting individual variation in reproductive investment. However, there was no direct effect of fattening rate on clutch size (i.e., birds laying on the same date had similar clutch sizes, independent of their fattening rate). Instead, fattening rate indirectly affected clutch size via earlier lay dates, thus not supporting the original predictions of the optimization model. 5. Our results demonstrate that variation in the rate of condition gain allows individuals to shift flexibly along the seasonal decline in clutch size to presumably optimize the combination of laying date and clutch size.

opencc-zeroDec 2012View details →

Data from: Assessing species boundaries and the phylogenetic position of the rare Szechwan Ratsnake, Euprepiophis perlacea (Serpentes: Colubridae), using coalescent-based methods

Delimiting species and clarifying phylogenetic relationships are the main goals of systematics. For species with questionable taxonomic status, species delimitation approaches using multi-species coalescent models with multiple loci are recommended if morphological data are unavailable or unhelpful. Moreover, these methods will also reduce subjectivity based on genetic distance or requirement of monophyletic genetic lineages. We determine the validity and phylogenetic position of a rare and long controversial species of Chinese reptile, the Szechwan ratsnake (Euprepiophis perlacea), using multi-locus data from multiple individuals and coalescent-based approaches. Species were first delimited using Bayesian Phylogenetics & Phylogeography (BP&P), Brownie and Bayes Factor model comparison approaches, while relationships among species were estimated using species tree inference in *BEAST. Results indicate that Euprepiophis perlacea is a distinct species sister to Euprepiophis mandarinus. Despite gene tree discrepancy, the coalescent model-based approaches used here demonstrate the taxonomic validity and the phylogenetic position of Euprepiophis perlacea. These approaches objectively test the validity of questionable species diagnoses based on morphological characters and determine their phylogenetic position.

Data from: Positive species diversity and above-ground biomass relationships are ubiquitous across forest strata despite interference from overstorey trees

There is growing concern over rates of global species diversity loss and its implications on healthy ecosystem functioning. While positive relationships between tree species diversity and forest biomass production have been observed, forests are structurally complex, consisting of understorey vegetation layers that also contribute to ecosystem functioning as they often account for the majority of species richness. However, relationships between understorey vegetation diversity and function are largely unexplored. Further, few studies have simultaneously assessed how both overstorey and understory vegetation interact and contribute to overall ecosystem function. By analysing Canada's National Forest Inventory data base using structural equation modelling, we explored the relationships between species richness and above-ground biomass production across forest vegetation strata while accounting for potentially confounding factors, including climate, physical site characteristics and forest ageing. We found positive relationships between species richness and biomass production across all forest vegetation layers, but the relationship was strongest for the overstorey layer. Species richness of the understorey tree, shrub and herb layers was positively related to overstorey species richness. However, overstorey biomass had a negative effect on the biomass production of all understorey layers. Our results suggest that resource filtering by overstorey trees might have reduced the strength of the positive diversity–productivity relationships in the forest understorey, supporting previous hypotheses that the magnitude and direction of diversity–productivity relationships is context specific and dependent on the conditions of the surrounding environment. Further, heterogeneity in understory resources, as affected by the overstorey, may promote niche complementarity as the main mechanism driving diversity–productivity relationships in understorey vegetation.

Data from: Aquatic omnivores shift their trophic position towards increased plant consumption as plant stoichiometry becomes more similar to their body stoichiometry

Human induced eutrophication has strongly altered aquatic ecosystems. With increasing eutrophication, plant nutrient concentrations increase, making them more attractive as food for herbivores. However, most aquatic consumers are omnivorous. Ecological stoichiometry theory predicts that animals prefer to consume food which has a similar nutrient (N and P) composition or C:nutrient ratio compared to their own bodies, hence omnivorous animals may prefer to eat animal prey instead of plants. We ask whether aquatic omnivores would shift their diet towards more plant consumption when plants are more nutritious and their stoichiometry becomes more similar to the stoichiometry of the omnivore. We hypothesized that: (1) the omnivore increases plant consumption as the plant C:nutrient ratio decreases when there is only plant material available; (2) the omnivore generally prefers animal food over plant material; (3) the omnivore will increase its relative plant consumption as the plant C:nutrient ratio decreases, in the presence of animal food. As a model system, we used the pond snail Lymnaea stagnalis (omnivorous consumer), the aquatic plant Potamogeton lucens (plant food to the consumer, cultured at different nutrient regimes to obtain different plant C:nutrient ratios), and the crustacean Gammarus pulex (animal food to the consumer, using freshly dead individuals). When there was only plant material available, the consumers increased their relative consumption rate with decreasing plant C:nutrient ratio from no measurable amount to about 102 mg g-1 day-1. When plant material was offered simultaneously with animal food, even though the omnivores always preferred animal food over plant material, the omnivores still increased their relative intake of plant material as plant C:nutrient ratio decreased, from virtually nothing at the highest to on average 16% of their diet at the lowest plant C:nutrient ratio, with a maximum of 28%. Therefore, we conclude that as nutrient loading increases in aquatic ecosystems, plant-eating omnivorous animals may shift their trophic position towards increased plant consumption and alter the food web structure. As a result, we may observe increased top-down control on aquatic plants.

Data from: Bat communities respond positively to large-scale thinning of forest regrowth

Over half of the world's forests are secondary regrowth and support considerable biodiversity. Thinning of these forests is a widespread management practice that can affect forest species, including echolocating bats and their prey. We compared total activity of 11 bat taxa, foraging activity of six bat guilds and biomass of 11 insect orders across four forest thinning categories in managed remnant eucalypt forests in south-eastern Australia: unthinned regrowth, forest thinned recently (0–4 years) and in the medium term (5–10 years) and reference (mature open forest). Thinning had been carried out at large (˜350 ha) spatial scales. Total bat activity was 60% less and foraging activity was 80% less in unthinned regrowth, compared to reference sites, but activity levels were similar among thinned and reference sites. Insect biomass was greatest in unthinned sites, and while bat activity was related to prey biomass, this relationship was weak in unthinned sites. Together, this suggests that forest structure was more important than prey availability or time since thinning in influencing bat activity patterns. Synthesizing our findings with the broader literature on bats and thinning, we found support for a clutter threshold of 1100 stems ha−1, above which bat activity was markedly lower, across two continents (the USA and Australia) and four broad vegetation types (eucalypt, conifer, deciduous and mixed forests). While elsewhere bats with adaptive traits for open habitats generally respond positively to thinning, in our study, species with traits consistent with clutter tolerance (high call frequency and low wing aspect ratio) had lowest activity levels (up to 22 times) in unthinned regrowth compared to all other forest types. Synthesis and applications. Widespread dense regrowth forest can restrict movement and foraging of bats, even those adapted to clutter. We recommend thinning dense regrowth or plantations to below 1100 stems ha−1 when targeting bat foraging habitat, but effects of thinning on roost habitat and other forest biota require further investigation.

Data from: Counteracting effects of a non-native prey on demography of a native predator culminate in positive population growth

Identifying impacts of non-native species on native populations is central to conservation and ecology. While effects of non-native predators on native prey populations have recently received much attention, impacts of introduced prey on native predator populations are less understood. Non-native prey can influence predator behavior and demography through direct and indirect pathways, yet quantitative assessments of the relative impacts of multiple, potentially counteracting, effects on native predator population growth remain scarce. Using ≈20 years of range-wide monitoring data, we tested for effects of a recently-introduced, rapidly-spreading non-native prey species (Pomacea maculata) on the behavior and demography of the endangered snail kite (Rostrhamus sociabilis). Previous studies found that food-handling difficulties caused by the large size of P. maculata (relative to the native P. paludosa) can lead to energetic deficiencies in juvenile kites, suggesting the potential for evolutionary traps to occur. However, high densities of P. maculata populations could facilitate kites by providing supplemental food resources. Contrary to prior hypotheses, we found that juvenile apparent survival increased ≈50% in wetlands invaded by non-native snails. Breeding rates and number of young fledged/successful nest were also positively associated with non-native snail presence, suggesting direct trophic benefits to kites. We found no direct effects of the invasive snail on adult survival or daily nest survival rates. Kite movements and breeding distribution closely tracked the spread of non-native snail populations. Since 2005, kites have been heavily concentrated in northern regions where non-native snails have established. This geographic shift has had hidden costs, as use of northern regions is associated with lower adult survival. Despite negative impacts to this key vital rate, matrix population modeling indicated that the multifarious effects of the non-native snail invasion on kites culminated in increased population growth rates, likely lowering short-term extinction risks. Results suggest that considering only particular components of behavior or demography may be inadequate to infer the population-dynamic importance of non-native prey on native predators, including their role in creating potential evolutionary traps. Our findings provide information pertinent to Everglades restoration, highlighting potential management trade-offs for non-native species that may aid imperiled species recovery yet disrupt other native communities.

opencc-zeroNov 2019View details →

Artificial light at night erases positive interactions across trophic levels

<p>1. Artificial light at night (ALAN) is one of the most recently recognized sources of anthropogenic disturbance, with potentially severe effects on biological systems that are still to be fully explored. Among marine ecosystems, high shore habitats are those more likely to be impacted by ALAN, due to a more intense exposition to outdoor nocturnal lightings (mostly from lamps along coastal streets and promenades, or within harbors, ports and marinas). 2. By performing in situ nocturnal manipulations of a direct source of white LED light and presence of herbivores in a Mediterranean high-shore habitat, we assessed the interactive effects of light pollution and grazing on two key functional components of the epilithic microbial community (the cyanobacteria, as the main photoautotrophic component, and the other bacteria, mainly dominated by heterotrophs) developing on rocky shores. 3. Results showed an unexpected increase in the diversity of epilithic bacterial biofilm at unlit sites in the presence of grazers, that was more evident on the other (mainly heterotrophic) bacterial component, when giving weight to more abundant families. This effect was likely related to the mechanical removal of dead cells through the grazing activity of consumers. ALAN significantly modified this scenario, by reducing the density of grazers and thus erasing their effects on bacteria, and by increasing the diversity of more abundant cyanobacterial families. 4. Overall, direct and indirect effects on ALAN resulted in a significant increase in the diversity of the photoautotrophic component and a decrease in the heterotrophic one, likely affecting key ecosystem functions acting on rocky shore habitats. 5. ALAN may represent a threat for natural systems through the annihilation of positive interactions across trophic levels, potentially impairing the relationship between biodiversity and functioning of ecosystems and interacting with other global and local stressors currently impinging on coastal areas.</p>

opencc-zeroDec 2016View details →

Data from: Strong positive effects of termites on savanna bird abundance and diversity are amplified by large herbivore exclusion

Vast areas of the African savanna landscapes are characterized by tree-covered Macrotermes termite mounds embedded within a relatively open savanna matrix. In concert with termites, large herbivores are important determinants of savanna woody vegetation cover. The relative cover of woody species has considerable effects on savanna function. Despite the potentially important ecological relationships between termite mounds, woody plants, large herbivores, and birds, these associations have previously received surprisingly little attention. We experimentally studied the effects of termites and large herbivores on the avian community in Lake Mburo National Park, Uganda, where woody vegetation is essentially limited to termite mounds. Our experiment comprised of four treatments in nine replicates; unfenced termite mounds, fenced mounds (excluding large mammals), unfenced adjacent savanna, and fenced savanna. We recorded species identity, abundance, and behavior of all birds observed on these plots over a two-month period, from late dry until wet season. Birds used termite mounds almost exclusively, with only 3.5% of observations occurring in the treeless intermound savanna matrix. Mean abundance and species richness of birds doubled on fenced (large herbivores excluded) compared to unfenced mounds. Feeding behavior increased when large mammals were excluded from mounds, both in absolute number of observed individuals, and relative to other behaviors. This study documents the fundamental positive impact of Macrotermes termites on bird abundance and diversity in an African savanna. Birds play crucial functional roles in savanna ecosystems, for example, by dispersing fruits or regulating herbivorous insect populations. Thus, the role of birds in savanna dynamics depends on the distribution and abundance of termite mounds.

Data from: Phagocyte chase behaviors—discrimination between Gram-negative and Gram-positive bacteria by amoebae

Phagocytes are cells that pursue, engulf, and kill bacteria. They include macrophages and neutrophils of the mammalian immune system, but also free-living amoebae that hunt and engulf bacteria for food. Phagocytosis can result in diverse outcomes, ranging from sustenance to infection and colonization by either pathogens or beneficial symbionts—and thus, discrimination may be necessary to seek out good bacteria while avoiding bad ones. Here we tested whether the soil amoeba Dictyostelium discoideum can discriminate among different types of bacteria, using behavioral assays where amoebae were presented with paired choices of different bacteria. We observed variation in the extent to which the amoebae pursued different types of bacteria, as well as preferential migration towards Gram-negative over Gram-positive bacteria. Response profiles were similar for amoebae that originated from different geographic locations, suggesting that chase preference is conserved across much of the species range. While prior work has demonstrated that bacteria will use chemotaxis to seek out amoebae they colonize, our work suggests that the opposite also occurs—amoebae can preferentially direct themselves to particular bacteria in the environment. Preferential sensing and response may help to explain why some amoeba-bacterial associations are more common in nature than others.

Data from: Signatures of positive selection in African Butana and Kenana dairy zebu cattle

Butana and Kenana are two types of zebu cattle found in Sudan. They are unique amongst African indigenous zebu cattle because of their high milk production. Aiming to understand their genome structure, we genotyped 25 individuals from each breed using the Illumina BovineHD Genotyping BeadChip. Genetic structure analysis shows that both breeds have an admixed genome composed of an even proportion of indicine (0.75 ± 0.03 in Butana, 0.76 ± 0.006 in Kenana) and taurine (0.23 ± 0.009 in Butana, 0.24 ± 0.006 in Kenana) ancestries. We also observe a proportion of 0.02 to 0.12 of European taurine ancestry in ten individuals of Butana that were sampled from cattle herds in Tamboul area suggesting local crossbreeding with exotic breeds. Signatures of selection analyses (iHS and Rsb) reveal 87 and 61 candidate positive selection regions in Butana and Kenana, respectively. These regions span genes and quantitative trait loci (QTL) associated with biological pathways that are important for adaptation to marginal environments (e.g., immunity, reproduction and heat tolerance). Trypanotolerance QTL are intersecting candidate regions in Kenana cattle indicating selection pressure acting on them, which might be associated with an unexplored level of trypanotolerance in this cattle breed. Several dairy traits QTL are overlapping the identified candidate regions in these two zebu cattle breeds. Our findings underline the potential to improve dairy production in the semi-arid pastoral areas of Africa through breeding improvement strategy of indigenous local breeds.

opencc-zeroDec 2014View details →

Data from: How a GNSS receiver is held may affect static horizontal position accuracy

The static horizontal position accuracy of a mapping-grade GNSS receiver was tested in two forest types over two seasons, and subsequently was tested in one forest type against open sky conditions in the winter season. The main objective was to determine whether the holding position during data collection would result in significantly different static horizontal position accuracy. Additionally, we wanted to determine whether the time of year (season), forest type, or environmental variables had an influence on accuracy. In general, the F4Devices Flint GNSS receiver was found to have mean static horizontal position accuracy levels within the ranges typically expected for this general type of receiver (3 to 5 m) when differential correction was not employed. When used under forest cover, in some cases the GNSS receiver provided a higher level of static horizontal position accuracy when held vertically, as opposed to held at an angle or horizontally (the more natural positions), perhaps due to the orientation of the antenna within the receiver, or in part due to multipath or the inability to use certain satellite signals. Therefore, due to the fact that numerous variables may affect static horizontal position accuracy, we only conclude that there is weak to moderate evidence that the results of holding position are significant. Statistical test results also suggest that the season of data collection had no significant effect on static horizontal position accuracy, and results suggest that atmospheric variables had weak correlation with horizontal position accuracy. Forest type was found to have a significant effect on static horizontal position accuracy in one aspect of one test, yet otherwise there was little evidence that forest type affected horizontal position accuracy. Since the holding position was found in some cases to be significant with regard to the static horizontal position accuracy of positions collected in forests, it may be beneficial to have an understanding of antenna positioning within the receiver to achieve the greatest accuracy during data collection.

opencc-zeroDec 2016View details →

Data from: Linkage into care among newly diagnosed HIV-positive individuals tested through outreach and facility-based HIV testing models in Mbeya, Tanzania: a prospective mixed-method cohort study

Objective: Linkage to care is the bridge between HIV testing and HIV treatment, care and support. In Tanzania, mobile testing aims to address historically low testing rates. Linkage to care was reported at 14% in 2009 and 28% in 2014. The study compares linkage to care of HIV-positive individuals tested at mobile/outreach versus public health facility-based services within the first 6 months of HIV diagnosis. Setting: Rural communities in four districts of Mbeya Region, Tanzania. Participants: A total of 1012 newly diagnosed HIV-positive adults from 16 testing facilities were enrolled into a two-armed cohort and followed for 6 months between August 2014 and July 2015. 840 (83%) participants completed the study. Main outcome: measures We compared the ratios and time variance in linkage to care using the Kaplan-Meier estimator and Log rank tests. Cox proportional hazards regression models to evaluate factors associated with time variance in linkage. Results: At the end of 6 months, 78% of all respondents had linked into care, with differences across testing models. 84% (CI 81% to 87%, n=512) of individuals tested at facility-based site were linked to care compared to 69% (CI 65% to 74%, n=281) of individuals tested at mobile/outreach. The median time to linkage was 1 day (IQR: 1–7.5) for facility-based site and 6 days (IQR: 3–11) for mobile/outreach sites. Participants tested at facility-based site were 78% more likely to link than those tested at mobile/outreach when other variables were controlled (AHR=1.78; 95% CI 1.52 to 2.07). HIV status disclosure to family/relatives was significantly associated with linkage to care (AHR=2.64; 95% CI 2.05 to 3.39). Conclusions: Linkage to care after testing HIV positive in rural Tanzania has increased markedly since 2014, across testing models. Individuals tested at facility-based sites linked in significantly higher proportion and modestly sooner than mobile/outreach tested individuals. Mobile/outreach testing models bring HIV testing services closer to people. Strategies to improve linkage from mobile/outreach models are needed.

opencc-zeroDec 2011View details →

Data from: Positional cloning of rp2 QTL associates the P450 genes CYP6Z1, CYP6Z3 and CYP6M7 with pyrethroid resistance in the malaria vector Anopheles funestus

Pyrethroid resistance in Anopheles funestus is threatening malaria control in Africa. Elucidation of underlying resistance mechanisms is crucial to improve the success of future control programs. A positional cloning approach was used to identify genes conferring resistance in the uncharacterised rp2 QTL previously detected in this vector using F6 Advanced Intercross Lines (AIL). A 113 kb BAC clone spanning rp2 was identified and sequenced revealing a cluster of fifteen P450 genes and one salivary protein gene (SG7-2). Contrary to An. gambiae, AfCYP6M1 is triplicated in An. funestus while AgCYP6Z2 ortholog is absent. 565 new SNPs were identified for genetic mapping from rp2 P450s and other genes revealing high genetic polymorphisms with 1 SNP every 36bp. A significant genotype/phenotype association was detected for rp2 P450s but not for a cluster of cuticular protein genes previously associated with resistance in An. gambiae. QTL mapping using F6 AIL confirms the rp2 QTL with an increase logarithm of odds (LOD) score of 5. Multiplex gene expression profiling of 15 P450s and other genes around rp2 followed by individual validation using qRT-PCR indicated a significant over-expression in the resistant FUMOZ-R strain of the P450s AfCYP6Z1, AfCYP6Z3, AfCYP6M7 and the glutathione-s-transferase GSTe2 with respective fold-change of 11.2, 6.3, 5.5 and 2.8. Polymorphisms analysis of AfCYP6Z1 and AfCYP6Z3 identified amino acid changes potentially associated with resistance further indicating that these genes are controlling the pyrethroid resistance explained by the rp2 QTL. The characterisation of this rp2 QTL significantly improves our understanding of resistance mechanisms in An. funestus.

opencc-zeroDec 2018View details →

Data from: Omnivory in bees: elevated trophic positions among all major bee families

As pollen- and nectar-foragers, bees have long been considered strictly herbivorous. Their pollen-provisions, however, are host to abundant microbial communities, which feed on the pollen before/while it is consumed by bee larvae. In the process, microbes convert pollen into a complex of plant and microbial components. Since microbes are analogous to metazoan consumers within trophic hierarchies, the pollen-eating microbes are, functionally, herbivores. When bee larvae consume a microbe-rich pollen complex, they ingest proteins from plant and microbial sources, thus should register as omnivores on the trophic "ladder." We tested this hypothesis by examining the isotopic compositions of amino acids extracted from native bees collected in North America over multiple years. We measured bee trophic position across the six major bee families. Our findings indicate that bee trophic identity was consistently and significantly higher than that of strict herbivores, providing the first evidence that omnivory is ubiquitous among bee fauna. Such omnivory suggests that pollen-borne microbes represent an important protein source for larval bees, which introduces new questions as to the link between floral fungicide residues and bee development.

Data from: Crimson spotted rainbowfish (Melanotaenia duboulayi) change their spatial position according to nutritional requirement

Decision making in moving animal groups has been shown to be disproportionately influenced by individuals at the front of groups. Therefore, an explanation of state-dependent positioning of individuals within animal groups may provide a mechanism for group movement decisions. Nutritional state is dynamic and can differ between members of the same group. It is also known to drive animal movement decisions. Therefore, we assayed 6 groups of 8 rainbowfish foraging in a flow tank. Half of the fish had been starved for 24h and half had been fed 1h prior to experimental start. Groups were assayed again one week later but individuals were allocated to the opposite nutritional treatment. During the assay the positions of individually identified fish were recorded as were the number of food items they each ate and the position within the group they acquired them from. Food-deprived fish were more often found towards the front of the shoal; the mean weighted positional score of food-deprived fish was significantly larger than that of well-fed fish. Individuals were not consistent in their position within a shoal between treatments. There was a significant positive correlation between mean weighted positional score and number of food items acquired which displays an obvious benefit to front positions. These results suggest that positional preferences are based on nutritional state and provide a mechanism for state-dependent influence on group decision-making as well as increasing our understanding of what factors are important for group functioning.