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FIGURE 1 in Two new endophytic fungi of Colletotrichum and Diaporthe isolated from Berchemia polyphylla var. leioclada in Guizhou Province, China
FIGURE 1. Colletotrichum berchemiae (ex-type culture, GMBCC 20001). a, b Front and reverse colony on PDA. c–e Conidiomata on PDA. h–j Conidiophores. k–m Conidiogenous cells and conidia. n–p Conidia. Scale bars: f = 100 μm; g–i, n = 20 μm, j, k = 30um, l, m, o, p = 10 um.
FIGURE 3 in Two new endophytic fungi of Colletotrichum and Diaporthe isolated from Berchemia polyphylla var. leioclada in Guizhou Province, China
FIGURE 3. Results of the PHI test of Colletotrichum berchemiae and closely related species using both LogDet transformation and splits decomposition. The PHI test results (Φw) <0.05 indicate significant recombination within the dataset. The new taxa are in red.
FIGURE 2 in Tubakia byeongjinii, a new species of Tubakiaceae, isolated from Quercus variabilis in South Korea
FIGURE 2. Leaf spot on seedlings of Quercus variabilis caused by Tubakia byeongjinii. A. Symptoms on leaves. B. Scutellum and conidia in germination. C. Close-up view of symptoms and conidiomata. D. Top view of radiate scutellum. E. Conidia. Scale bar: 10 µm.
FIG. 5 in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods
FIG. 5. Genetic distances between salamanders that hybridize with heteromorphic sex chromosomes (median ¼ 0.109) and salamanders that hybridize without sex chromosomes (median ¼ 0.152). There is no significant difference (P ¼ 0.5293) between salamanders with sex chromosomes and salamanders without sex chromosomes.
FIG. 2 in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods
FIG. 2. (A) Histogram of cytochrome b (MT-CYB) genetic distance estimates (HKY85 þ C) between salamanders that hybridize. Graph bin width is 0.0125. (B) Ratio of mitochondrial MT-CYB genetic distance to nuclear recombination activating 1 (RAG1) genetic distance between parental species of salamanders that hybridize on a log scale. The ratio of genetic distance ranged from 0.6 to 162 with the majority of species pairs having a higher mitochondrial genetic distance (median ¼ 21.1).
FIG. 3. Cytochrome b in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods
FIG. 3. Cytochrome b (MT-CYB) genetic distances between parental species that hybridize in different tetrapod groups. Kruskal-Wallis H test showed no significant differences across the groups (P ¼ 0.661). Salamanders are not hybridizing across greater genetic distances.
FIG. 1 in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods
FIG. 1. Salamander hybrids are found in most families (Pyron and Wiens, 2011). About 12.1% of salamanders are known to hybridize with over half belonging to Plethodontidae. There was no significant correlation between the number of papers per species and the proportion of salamanders found to hybridize (Kendall's rank correlation P ¼ 0.236).
FIG. 4 in Comprehensive Analysis of Salamander Hybridization Suggests a Consistent Relationship between Genetic Distance and Reproductive Isolation across Tetrapods
FIG. 4. Genetic distance ratio of mitochondrial cytochrome b (MTCYB) to nuclear recombination activating 1 (RAG1) for pairs of species that hybridize in major tetrapod clade on a log scale. Kruskal-Wallis H test showed no strong significant differences across the four groups (P ¼ 0.108).
FIG. 4 in Going with the Flow: Testing the Role of Habitat Isolation among Three Ecologically Divergent Darter Species
FIG. 4. Reduced major axis regression plots from the isolation by distance analysis for (A) Ammocrypta beanii, (B) Etheostoma swaini, and (C) Percina nigrofasciata.
FIG. 3 in Going with the Flow: Testing the Role of Habitat Isolation among Three Ecologically Divergent Darter Species
FIG. 3. Bar plots representing estimated genetic clusters (K) and individual probability estimates of cluster assignment (Q values) from program STRUCTURE for (A) A. beanii at K ¼ 5, (B) E. swaini at K ¼ 2, and (C) P. nigrofasciata at K ¼ 4. The most likely K value was estimated using the ad hoc DK statistic (Evanno et al., 2005).
FIG. 2 in Going with the Flow: Testing the Role of Habitat Isolation among Three Ecologically Divergent Darter Species
FIG. 2. Chart showing habitat characteristics of each darter species and predicted levels of gene flow between populations based on habitat variables. FST represents population differentiation, while AR represents allelic richness. Arrows pointing up indicate an increase, arrows pointing down a decrease, and horizontal arrows indicate moderate/intermediate levels. Illustrations were designed by Elizabeth Marchio (elizabeth. marchio@gmail.com; www.lizmarchio.com).
FIG. 1 in Going with the Flow: Testing the Role of Habitat Isolation among Three Ecologically Divergent Darter Species
FIG. 1. Map of Pearl River including sampling sites for the three darter species. Ammocrypta beanii, Etheostoma swaini, and Percina nigrofasciata are represented by circles, squares, and diamonds, respectively. Map was generated using ArcGIS ArcMap 10.
FIG. 2 in Sexual Isolation between Two Sympatric Desmognathus in the Gulf Coastal Plain
FIG. 2. Joint isolation coefficients from published studies of crosses between species of plethodontids. Joint isolation (JI) coefficients for insemination from crosses between allopatric (black) and sympatric (gray) taxa are represented as a histogram. Results from this study (JI ¼ 1.21) between sympatric D. aff. auriculatus and D. conanti (SL) are indicated with a patterned fill. Previously published studies represented in this figure include Verrell (1989b, 1990a, 1990b), Verrell and Tilley (1992), Uzendoski and Verrell (1993), Arnold et al. (1996), Herring and Verrell (1996), Kozak (2003), and Mabry and Verrell (2004).
FIG. 1 in Sexual Isolation between Two Sympatric Desmognathus in the Gulf Coastal Plain
FIG. 1. Collection localities in the Pascagoula and Pearl river drainages. The inset includes a portion of the Gulf Coastal Plain with state names abbreviated and the study area enclosed within a gray square. White and gray circles mark locations from which only D. aff. auriculatus or D. conanti (SL) were collected, respectively. The black square marks a locality from which both species were collected syntopically.
Figure 2 in An isolated crested newt population in Dutch coastal dunes: distribution relict or introduction?
Figure 2. Bayesian phylogeny based on all ND4 mtDNA haplotypes of the northern crested newt Triturus cristatus. The outgroup is not shown. The scale bar shows the expected changes per site. The partitioning into three main clades is based on Wielstra et al. (2015). Haplotypes in blue are (also) present in the Netherlands. See supplementary table S1 for details.
Figure 1 in An isolated crested newt population in Dutch coastal dunes: distribution relict or introduction?
Figure 1. Sampled localities for the northern crested newt Triturus cristatus. The inset shows localities in the Netherlands, coloured based on ND4 mtDNA haplotype. Arrows highlight populations discussed in the text: 1) Meijendel and Westduinpark; 2) Krimpen aan den IJssel and Oudeland; 3) Norg; and 4) Breda. A rough outline of the natural distribution range in the Netherlands is shaded grey. See supplementary table S1 for details. The main map shows haplotype distribution in the rest of Europe and particularly focusses on those haplotypes also present in the Netherlands (see text for details).
Data for "Statistical Process Monitoring of Isolated and Persistent Defects in Complex Geometrical Shapes"
<p>Simulated data used in the paper "Statistical Process Monitoring of Isolated and Persistent Defects in Complex Geometrical Shapes" by Daniele Zago, Bianca Maria Colosimo, and Giovanna Capizzi.</p> <p>The files includes MATLAB code used to generate the simulated noisy meshes.</p>
The gene structure annotation, gene function annotation and TE annatition files for the Cibotium barometz isolate CiBa-2024 genome
<p>This dataset comprises comprehensive annotation files for the genome of Cibotium barometz (Golden Chicken Fern), isolate CiBa-2024. It includes gene structure predictions, functional annotations, and transposable element (TE) identifications, complementing the chromosome-level genome assembly. The gene structure annotation provides detailed information on predicted gene models, including exon-intron boundaries and coding sequences. Functional annotations offer insights into the potential roles of identified genes, including Gene Ontology (GO) terms, protein domains, and pathway associations. The TE annotation file details the classification and distribution of transposable elements within the genome. These annotations were generated using state-of-the-art bioinformatics tools and databases, offering a valuable resource for researchers studying fern genomics, plant evolution, and the genetic basis of C. barometz's unique biological features, including its medicinal properties. This dataset aims to facilitate further research in comparative genomics, functional studies, and the exploration of fern biology and evolution.</p>
Performance-based habitat choice can drive rapid adaptive divergence and reproductive isolation - Data
<p>Data for Performance-based habitat choice can drive rapid adaptive divergence and reproductive isolation</p>
FIGURE 3. Scleroramularia musae isolate GLZJXJ13B. A in A new species of Scleroramularia associated with sooty blotch and flyspeck in Southern China
FIGURE 3. Scleroramularia musae isolate GLZJXJ13B. A. Colony on synthetic nutrient-poor agar (SNA) after 2 weeks. B. Colony on PDA (note sclerotia). C. Flyspeck signs on banana peel. D, G, H. Chains of conidia. E, F. Conidiogenous cells giving rise to chains of conidia. Scale bars: E, F = 20 μm, D, G, H = 10 μm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.