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Potential energy surface and rovibrational line lists for thiopropynal
<p>Molpro restart files (ASCII) for the XSURF program of the potential energy and dipole moment surfaces of thiopropynal. Rovibrational line list (ASCII) obtained from RVCI calculations. Data refer to the publication <em>Rovibrational calculations without model Hamiltonians: the infrared and microwave spectra of thiopropynal (https://doi.org/<span>10.1002/qua.27378</span>).<br></em></p>
Figure 7 in Systematic list of Genus Megophrys Kuhl and van Hasselt, 1822 (Amphibia: Anura: Megophryidae) in Meghalaya, North-East India with a discussion on the distribution of M. wuliangshanensis Ye and Fei, 1995 in India
Figure 7. Dorsal view of Megophrys zunhebotoensis
Figure 8 in Systematic list of Genus Megophrys Kuhl and van Hasselt, 1822 (Amphibia: Anura: Megophryidae) in Meghalaya, North-East India with a discussion on the distribution of M. wuliangshanensis Ye and Fei, 1995 in India
Figure 8. Dorsal view of Megophrys glandulosa
Figure 6 in Systematic list of Genus Megophrys Kuhl and van Hasselt, 1822 (Amphibia: Anura: Megophryidae) in Meghalaya, North-East India with a discussion on the distribution of M. wuliangshanensis Ye and Fei, 1995 in India
Figure 6. Dorsal view of Megophrys robusta
Figure 5 in Systematic list of Genus Megophrys Kuhl and van Hasselt, 1822 (Amphibia: Anura: Megophryidae) in Meghalaya, North-East India with a discussion on the distribution of M. wuliangshanensis Ye and Fei, 1995 in India
Figure 5. Dorsal view of Megophrys parva
Figure 4 in Systematic list of Genus Megophrys Kuhl and van Hasselt, 1822 (Amphibia: Anura: Megophryidae) in Meghalaya, North-East India with a discussion on the distribution of M. wuliangshanensis Ye and Fei, 1995 in India
Figure 4. Ventral view of Megophrys oropedion
Figure 2 in Systematic list of Genus Megophrys Kuhl and van Hasselt, 1822 (Amphibia: Anura: Megophryidae) in Meghalaya, North-East India with a discussion on the distribution of M. wuliangshanensis Ye and Fei, 1995 in India
Figure 2. Femoral glands of Megophrys major
Figure 1 in Systematic list of Genus Megophrys Kuhl and van Hasselt, 1822 (Amphibia: Anura: Megophryidae) in Meghalaya, North-East India with a discussion on the distribution of M. wuliangshanensis Ye and Fei, 1995 in India
Figure 1. Dorsal view of Megophrys major
Figure 3 in Systematic list of Genus Megophrys Kuhl and van Hasselt, 1822 (Amphibia: Anura: Megophryidae) in Meghalaya, North-East India with a discussion on the distribution of M. wuliangshanensis Ye and Fei, 1995 in India
Figure 3. Dorsal view of Megophrys oropedion
Meta-Organizations: a preliminary list of federations and confederations of states, tribes and indigenous peoples
<p>In the context of the project MetaOrgTrans and for the specific purpose of my research habilitation, I quickly constituted a database of federations and confederations of states, tribes and indigenous communities to identify meta-organizations that were not necessarily contitutive of western modernity. This is based on a list of confederations of states and tribes on Wikipedia (<a href="https://en.wikipedia.org/wiki/List_of_confederations">https://en.wikipedia.org/wiki/List_of_confederations</a>) and a list of indigenous peoples’ organizations signatories the RIO +20 indigenous peoples’ international conference on self-determination and sustainable development (<a href="https://www.forestpeoples.org/sites/fpp/files/publication/2012/06/list-indigenous-peoples-organizations-networks-and-federations-who-are-signatories-rio-20-indigenous.pdf">https://www.forestpeoples.org/sites/fpp/files/publication/2012/06/list-indigenous-peoples-organizations-networks-and-federations-who-are-signatories-rio-20-indigenous.pdf</a>)</p>
Real Estate Data for Barcelona - Idealista Listings
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Annotated transcription of the list of books that are recorded in Pieter de Graeff's probate inventory of Ilpenstein (1709)
<p>Annotated transcription of the list of books that are recorded in the probate inventory of Ilpenstein belonging to Pieter de Graeff (1638-1707), Amsterdam patrician and VOC director.</p> <p>Amsterdam City Archives, Inventaris van het Archief van de Notarissen ter Standplaats Amsterdam (nr. 5075), inv. nr. 5001, pp. 425–493, notary Michiel<br>Servaes (nr. 199), 8 March 1709, pp. 510-557.</p> <p>These books are analysed and discussed in C. Piccoli, <a href="https://brill.com/display/title/69863">Pieter de Graeff (1638-1707) and his <em>treffelyke bibliotheek</em>. Exploring and Reconstructing an Early Modern Private Library as a Book Collection and as a Physical Space</a> (Leiden: Brill, 2025). This dataset is published as supplementary material of this monograph.</p>
Solar Flare List for Pre-Flare Emission Variability Study
<p>Flare file: dates, GOES flare class, cutout coordinates used, and eruptivity/131 spike flags for pre-flare emission study</p> <p>Quiet file: dates, NOAA AR designation for non-flaring control cases</p>
National Checklists: Venezuela Species List
Data from: GBIF.org (23 January 2025) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.vd2ajk" target="_blank" rel="noopener">https://doi.org/10.15468/dl.vd2ajk</a>
National Checklists: Namibia Species List
Data from: GBIF.org (23 January 2025) GBIF Occurrence Download <a href="https://doi.org/10.15468/dl.vd2ajk" target="_blank" rel="noopener">https://doi.org/10.15468/dl.vd2ajk</a>
Perceptual maps of Heliconiini butterflies: images, 3D spaces, 2D maps, and mimicry ring listings
<h3>Summary</h3> <p>This repository contains<strong> images</strong>, <strong>3D animated spaces</strong>, <strong>2D perceptual maps with GMM</strong>, and <strong>mimicry ring lists</strong> for heliconiine butterflies complementing the analyses presented in this research paper:<em><strong> </strong>"Doré et al., 2025 - Perceptual maps reveal rampant convergence in butterfly wing patterns across the Neotropics. in prep."</em>.</p> <h3>Abstract</h3> <p> In 1879, Fritz Müller formulated the first mathematical evolutionary model to explain mutualistic mimicry between coexisting defended prey. Yet, the degree to which local mimicry drives the structure of prey aposematic signals at continental scale remains unclear, because the perception of pattern similarity has never been assessed at large spatial scale. Here, we implement a Citizen Science survey to quantify and analyze the structure of perceived variation in the wing patterns of heliconiine butterflies (Nymphalidae: Heliconiini) throughout the entire Neotropics. Despite a continuum of perceived wing patterns at the continental scale, we show that the convergence of sympatric species into discrete mimicry rings is ubiquitous among communities. These results expand Müller’s historical predictions by supporting the rampant convergence of prey signals across an entire continent. </p> <h3>Contents</h3> <p>This repository contains three folders:</p> <ul> <li><em>"3D_maps"</em> contains the <strong>animated 3D perceptual spaces</strong> of heliconiine wing patterns for the Citizen Science dataset (N = 432) and the Local reference for the five local communities highlighted in the article.</li> <li><em>"Clustering"</em> contains the <strong>2D perceptual maps</strong> and associated <strong>lists of mimicry rings</strong> built for each of the five local communities, for different level of clustering from GMM (K from 5 to 10).</li> <li><em>"Images"</em> contains the 432 <strong>images of dorsal wing patterns</strong> of heliconiine butterflies used in the online survey (<a href="https://memometic.cleverapps.io/">https://memometic.cleverapps.io/</a>) designed for this study.</li> </ul> <h3>How to cite</h3> <p>Please cite this research article as:</p> <blockquote> <p>Doré, M., Pérochon, E., Aubier, T.G., Le Poul, Y., Joron, M., Elias, M., 2025. Perceptual maps reveal rampant convergence in butterfly wing patterns across the Neotropics. in prep. <a href="https://doi.org/TBA">https://doi.org/TBA</a></p> </blockquote> <h3>Associated ressources</h3> <p>The source codes for the analyses carried out in the study are available on <a href="https://github.com/MaelDore/Perceptual_map_Heliconiini">GitHub</a>.<br> <br>The occurrences data and distribution maps used in this study are publicly available from Zenodo: Occurrences data at <a href="https://doi.org/10.5281/zenodo.10906853">https://doi.org/10.5281/zenodo.10906853</a>; Distribution maps at <a href="https://doi.org/10.5281/zenodo.10903661">https://doi.org/10.5281/zenodo.10903661</a>.</p> <p>The online Citizen Science survey on the perception of mimicry in wing color patterns of heliconiine butterflies is temporary available at <a href="https://memometic.cleverapps.io/">https://memometic.cleverapps.io/</a>.<br>Source code for the online Citizen Science survey are accessible on <a href="https://github.com/MaelDore/Memometic_website">GitHub</a>.</p>
Variables of importance in the projection (VIP) list with values > 1 from OPLS-DA analysis of Citrus samples inoculated with Xanthomonas citri subs. citri
<p>Features filtered containing Variables of importance in the projection (VIP) values > 1 from OPLS-DA analysis (SIMCA) of Citrus sinensis samples inoculated with Xanthomonas citri subs. citri after 24 and 48 hours post inoculation.</p>
FIG. 6 in Liste commentée des Saturniidae (Lepidoptera, Bombycoidea) de Guyane, avec la liste des taxons récoltés au Mitaraka (extrême sud-ouest guyanais)
FIG. 6. — Hylesiopsis festiva Bouvier, 1929 ♂, Guyane, Camopi, Mont Itoupé, Coll. FB (Env. 55 mm).
List of publicly available cellular reprogramming HTS datasets
<p>These datasets were obtained by manual curation via the following procedure: First, I queried GEO using keywords in the list below. </p> <ol> <li>Yamanaka</li> <li>Yamanaka AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) </li> <li>Reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) </li> <li>OSKM AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) </li> <li>Sox2 AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) </li> <li>Sox2 reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) </li> <li>somatic reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) </li> <li>somatic cell reprogramming AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) </li> <li>Reprogramming pluripotency AND ("Genome binding/occupancy profiling by high throughput sequen"[Filter]) </li> <li>Reprogramming pluripotency </li> <li>Reprogramming pluripotency AND ("Methylation profiling by high throughput sequencing"[Filter]) </li> <li>OSKM AND ("Methylation profiling by high throughput sequencing"[Filter]) </li> <li>Sox2 Reprogramming AND ("Methylation profiling by high throughput sequencing"[Filter]) </li> </ol> <p>Results were selected for manual input if they contained either transcriptomic (e.g., RNA-Sequencing) or epigenomics (e.g., RRBS) data and had at least one intermediate cellular reprogramming timepoint. </p> <p> </p>
A complete list of filtered variants and gene lists of frequently and recurrently mutated genes in DLBCL, MCL, T-NHL, and BL, as well as pre-assembled CNV gene list
<p>A complete list of variants which passed filtering described in supplemental methods, that were found in both PDX model sample and patient’s sample from which it was derived (S1A) and variants which were gained (S1B) or lost (S1C) during PDX model derivation. Gene lists for filtration of variants in genes of special interest are included in the table (S1D). Gene list for filtration of CNV changes in genes of special interest is included in the table (S1E). Chr - Chromosome, REF - Reference allele, ALT - Alternative allele, AA change - Amino acid change, Patient AF - Allele frequency in the patient’s sample, Patient Depth – Read depth in patient’s sample, PDX AF- Allele frequency in PDX model sample, PDX Depth - Read depth in PDX sample, DLBCL - Diffuse Large B-cell lymphoma, MCL - Mantle Cell Lymphoma, TCL - T-cell lymphoma, BL – Burkitt Lymphoma, and CNV - Copy Number Variation.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.