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12,393 results for “Materiality”
Supplementary material to: Angioarchitecture and hemodynamics of microvascular arterio-venous malformations
<p>Supplementary material (code and raw data) to the manuscript "Angioarchitecture and hemodynamics of microvascular arterio-venous malformations" by Frey et al., under consideration for publication in PLOS One</p>
Supplementary material for publication "Pore-scale salinity effects on methane hydrate dissociation" by Almenningen et al
<p>Supplementary materials for publication "Pore-scale salinity effects on methane hydrate dissociation"</p> <p>Abstract: Sedimentary methane gas hydrates may become a significant source of methane gas in the global energy mix for the next decades. The widespread distribution of methane hydrates, primarily in subsea sediments on continental margins, makes the crystalline compound attractive for countries with shorelines that seek self-sustainable energy. Fundamental understanding of pore-level methane hydrate distribution and dissociation pattern is important to anticipate the gas production from hydrate reservoirs. Especially the effect of local salinity gradients on dissociation characteristics must be understood as the aqueous phase in most reservoirs is saline. We evaluate the pore-level salinity effect on hydrate dissociation experimentally using silicon-wafer micro-models capable of withstanding high internal pressures. Methane hydrates were formed with brines for a range of salinities (0.0, 2.0, 3.5 and 5.0 wt% NaCl), and we study hydrate dissociation during both depressurization and thermal stimulation, which currently are the most cost-effective production methods. The laboratory results show how initial pore-scale hydrate distribution prior to dissociation affect the melting and mobilization of gas. The local pore-water salinities influenced the stability of the hydrate structure, and led to distinct dissociation patterns due to water freshening.</p>
Training data for 'Genetic map RADSeq ' tutorial (Galaxy Training Material)
<p>The data provided here are part of a study published by Amores<em> et al.</em> (2011) (<a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176089/">doi 10.1534/genetics.111.127324</a>), exploiting massively parallel DNA sequencing to develop meiotic maps by genotyping F<sub>1</sub> offspring of a single female and a single male spotted gar (<em>Lepisosteus oculatus</em>).</p>
Supplementary material for "can you tell me if it smells? A study on how developers discuss code smells and anti-patterns in Stack Overflow"
<p>This dataset contains all data and results from the "Can you tell me if it smells? A study on how developers discuss code smells and anti-patterns in Stack Overflow" paper that was accepted at the 22nd International Conference on Evaluation andAssessment in Software Engineering (EASE), Christchurch, New Zealand.</p>
Training material for Genome Annotation
<p>Genome annotation is the process of attaching biological information to sequences. It consists of three main steps:</p> <ul> <li>identifying portions of the genome that do not code for proteins</li> <li>identifying elements on the genome, a process called gene prediction, and</li> <li>attaching biological information to these elements.</li> </ul>
Experiment dataset supplementary materials for DLfM 2018 submission
<p>This is the experiment dataset supplementary materials for the DLfM 2018 paper submission:</p> <blockquote> <p>An extended jingju solo singing voice dataset and its application on automatic assessment of singing pronunciation and overall quality at phoneme-level</p> </blockquote> <p><strong>Files: </strong></p> <ol> <li> dlfm_experiment_dataset_file_list.ods: recording file names of train, validation and test sets split.</li> <li> dlfm_experiment_dataset_phoneme_numbers.ods: phoneme numbers of each phone class in train, validation and test sets.</li> <li> freesound_extractor_feature_list.ods: freesoundExtractor feature name list used in ANOVA feature analysis.</li> <li> log-mel-scaler-keys-label-encoder.zip: files required for training the embedding model, includes logarithmic features, feature scaler, phoneme dictionary keys and label encoder.</li> <li>anova_analysis_essentia_feature.zip: Essentia freesoundExtractor features of each phoneme for ANOVA analysis.</li> <li>pretrained_embedding_models.zip: classification embedding models pretrained on the below datasets.</li> </ol> <p>The recordings listed in dlfm_experiment_dataset_file_list.ods are taken from a collection of jingju solo singing voice audio datasets, which contains three parts:</p> <ul> <li>Part 1: <a href="https://doi.org/10.5281/zenodo.780559">https://doi.org/10.5281/zenodo.780559</a></li> <li>Part 2: <a href="https://doi.org/10.5281/zenodo.842229">https://doi.org/10.5281/zenodo.842229</a></li> <li>Part 3: <a href="https://doi.org/10.5281/zenodo.1244732">https://doi.org/10.5281/zenodo.1244732</a></li> </ul> <p><strong>Contact information</strong>:</p> <p><em>If you have any question, please contact the authors:</em></p> <p>Rong Gong: Email - rong<dot>gong<at>upf<dot>edu</p>
Supplementary materials. Exploring Tehran with excitable medium
<p>These are videos of excitation waves propagating on a fragment of street network of Tehran. These are supplementary materials for the paper "Exploring Tehran with excitable medium" (2018). </p> <p>Abstract </p> <p>An excitable chemical medium --- Belousov-Zhabotinsky (BZ) reaction --- is proven to be a fruitful substrate for prototyping unconventional computing devices. These include image processors, logical circuits, and robot controllers. We study a BZ potential for characterising a geometry of a street networks on a fragment of Tehran street map. The city was chosen because it is one of the most populated cities in the World with nearly uncontrollable urban growth. In numerical experiments with Oregonator model of BZ reaction we demonstrate that excitability of the medium allows acts as a selector between omnidirectional waves and soliton-like localised ex citations. We uncover a phase-transition like dynamics, controlled by the excitability, of coverage of the street network by excitation wave-fronts.</p>
Supplementary materials. Live traffic. Exploring Tehran with excitable medium
<p>These are videos of traffic in Tehran, used to analyse patterns of excitation on street network of Tehran. These are supplementary materials to the paper </p> <p>Exploring Tehran with excitable medium </p> <p>An excitable chemical medium --- Belousov-Zhabotinsky (BZ) reaction --- is proven to be a fruitful substrate for prototyping unconventional computing devices ~\cite{adamatzky2017east}. These include image processors, logical circuits, and robot controllers. We study a BZ potential for characterising a geometry of street networks on a fragment of Tehran street map. The city was chosen because it is one of the most populated cities in the World with nearly uncontrollable urban growth. In numerical experiments with Oregonator model of BZ reaction, we demonstrate that excitability of the medium allows acts as a selector between omnidirectional waves and soliton-like localised excitations. We uncover a phase-transition like dynamics, controlled by the excitability, of coverage of the street network by excitation wave-fronts. In the cluster analysis, we show how the network geometry, when it meets propagation of BZ wave-front, relates to the traffic flow of Tehran</p>
Assessing the Integrity of Older Archaeological Collections: An Example from La Ferrassie - supplemental material (data and R code)
<p>Supplemental data and R code for reproducing figures and table values in paper 'Assessing the Integrity of Older Archaeological Collections: An Example from La Ferrassie' by HL Dibble, SC Lin, DM Sandgathe, A Turq.</p>
Towards a Theory of Software Development Expertise — Supplementary Material
<p>Software development includes diverse tasks such as implementing new features, analyzing requirements, and fixing bugs. Being an expert in those tasks requires a certain set of skills, knowledge, and experience. Several studies investigated individual aspects of software development expertise, but what is missing is a comprehensive theory. We present a first conceptual theory of software development expertise that is grounded in data from a mixed-methods survey with 335 software developers and in literature on expertise and expert performance. Our theory currently focuses on programming, but already provides valuable insights for researchers, developers, and employers. The theory describes important properties of software development expertise and which factors foster or hinder its formation, including how developers' performance may decline over time. Moreover, our quantitative results show that developers' expertise self-assessments are context-dependent and that experience is not necessarily related to expertise.</p>
Supplementary material: Hyperfine-resolved rotation-vibration line list of ammonia (NH3)
<p>Supplementary material to the manuscript: P. Coles, A. Owens, J. Küpper, A. Yachmenev, A Hyperfine-resolved Rotation-Vibration Line List of Ammonia (NH<sub>3</sub>), <em>The Astrophysical Journal</em> <strong>870</strong>, 24 (2019), DOI: <a href="http://dx.doi.org/10.3847/1538-4357/aaef7e">http://dx.doi.org/10.3847/1538-4357/aaef7e</a></p> <p>Contains two archive files</p> <ol> <li><em>efg_surface.tar </em> - contains Fortran 90 program, together with the input/output examples and README file, for computing the electric field gradient tensor of NH<sub>3</sub></li> <li><em>linelist.tar</em> - contains compressed file with the rovibrational line list of NH<sub>3</sub> with quadrupole coupling components, along with programs to extract user-desired transition data and README file</li> </ol>
Linking Sketches and Diagrams to Source Code Artifacts — Supplementary Material
<p>Sketches and diagrams play an important role in the daily work of software developers. If they are archived, they are often detached from the source code they document, because there is no adequate tool support to assist developers in capturing, archiving, and retrieving sketches related to certain source code artifacts. We implemented <em>SketchLink</em> to increasing the value of sketches and diagrams created during software development by supporting developers in these tasks. Our prototype implementation provides a web application that employs the camera of smartphones and tablets to capture analog sketches, but can also be used on desktop computers to upload, for instance, computer-generated diagrams. We also implemented a plugin that embeds the links in Javadoc comments and visualizes them in situ in the source code editor as graphical icons for the IntelliJ Java IDE. Besides being a useful software documentation tool, SketchLink also enables developers to navigate through their source code using the linked sketches and diagrams.</p> <p>This dataset contains:</p> <ul> <li>The source code of the <em>SketchLink</em> server, web application, and IntelliJ plugin.</li> <li>A demo video.</li> <li>Recordings of the user study sessions (audio removed due to confidentiality).</li> <li>The questionnaire and task list used for the plugin study sessions.</li> </ul>
Supplementary materials for the paper Adamatzky A. 2018 Towards fungal computer. Interface Focus 8: 20180029. http://dx.doi.org/10.1098/rsfs.2018.0029
<p>Supplementary materials for the paper Adamatzky A. 2018 Towards fungal computer. Interface Focus 8: 20180029. http://dx.doi.org/10.1098/rsfs.2018.0029</p>
Videos of a robot controlled by Belousov-Zhabotinsky liquid marbles. Supplementary materials to the paper "Belousov-Zhabotinsky liquid marbles in robot control".
<p>Videos and snapshots of experiments with robot controlled by liquid marbles made of Belousov-Zhabotinsky solution. </p> <p>Supplementary materials for the paper </p> <p> </p> <p>M.-A. Tsomapanas, C. Fullarton, A. Adamatzky. Belousov-Zhabotinsky liquid marbles in robot control. (2018). </p> <p>Abstract </p> <p>We show how to control the movement of a wheeled robot using on-board liquid marbles made of Belousov-Zhabotinsky solution coated by polyethylene powder. Two platinum-iridium electrodes were inserted in a marble and the electrical potential recorded was used to control the robot's motor. We stimulated the marble with a laser beam. It responded to the stimulation by pronounced change of the electrical potential output. The electrical output was detected by robot. The robot was changing its trajectory in response to the stimulation.</p> <p>This research was supported by the EPSRC with grant EP/P016677/1 ``Computing with Liquid Marbles''.</p> <p> </p>
Support Material for: S.I. Mimilakis et al., ``Examining the Perceptual Effect of Alternative Objective Functions for Deep Learning Based Music Source Separation''
<p>The audio corpus used for conducting the listening tests reported in S.I. Mimilakis et al., ``Examining the Perceptual Effect of Alternative Objective Functions for Deep Learning Based Music Source Separation''.</p>
The effect of numerical aperture on quantitative use-wear studies and its implication on reproducibility [complement to Supplementary Material 2]
<p>3D micro surface data processed in ConfoMap v7.4.8633 (a derivative of MountainsMap Imaging Topography developed by Digital Surf, Besançon, France).</p> <p>Instructions to download all files at once are given here: <a href="https://doi.org/10.5281/zenodo.4011952">https://doi.org/10.5281/zenodo.4011952</a></p>
Material suplementar da tese intitulada "Degradação de matéria orgânica terrestre por microrganismos do rio Amazonas - Metagenômica e Genômica Populacional"
<p>Estes arquivos representam os apêndices da tese "Degradação de matéria orgânica terrestre por microrganismos do rio Amazonas - Metagenômica e Genômica Populacional" de autoria de Célio Dias Santos Júnior e apresentada no dia 14 de dezembro de 2018 como requisito para obtenção do título de Doutor em Biologia molecular e Bioquímica pelo programa de pós-graduação em genética evolutiva e biologia molecular (PPGGEV) da Universidade Federal de São Carlos. A tese foi realizada sob a supervisão do professor Dr. Flávio Henrique Silva, e co-orientação do Dr. Ramiro Logares.</p>
Genomic data provides new insights on the demographic history and the extent of recent material transfers in Norway spruce
<p>This dataset includes files and scripts used for the paper "Genomic data provides new insights on the demographic history and the extent of recent material transfers in Norway spruce". </p>
Supplementary materials for the paper "Computing with liquid crystal fingers: Models of geometric and logical computation." Physical Review E 84.6 (2011): 061702.
<p>When a voltage is applied across a thin layer of cholesteric liquid crystal, fingers of cholesteric alignment can form and propagate in the layer. In computer simulation, based on experimental laboratory results, we demonstrate that these cholesteric fingers can solve selected problems of computational geometry, logic, and arithmetics. We show that branching fingers approximate a planar Voronoi diagram, and nonbranching fingers produce a convex subdivision of concave polygons. We also provide a detailed blueprint and simulation of a one-bit half-adder functioning on the principles of collision-based computing, where the implementation is via collision of liquid crystal fingers with obstacles and other fingers.</p>
Supplemental Material from: Immune Profiling of Thyroid Carcinomas Suggests the Existence of Two Major Phenotypes: an ATC-like and a PDTC-like
<p>Supplemental Material from: Immune Profiling of Thyroid Carcinomas Suggests the Existence of Two Major Phenotypes: an ATC-like and a PDTC-like</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.